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5330438I03Rik Gene Detail
Summary
  • Symbol
    5330438I03Rik
  • Name
    RIKEN cDNA 5330438I03 gene
  • Synonyms
    LOC381325
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2685831
    NCBI Gene: 381325
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr1:166134310-166137154 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 73.67 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    187 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685831
 lncRNA gene Chr1:166134310-166137154 (-)
129S1/SvImJ MGP_129S1SvImJ_G0002785
 antisense lncRNA gene Chr1:171830197-171833041 (-)
A/J MGP_AJ_G0002761
 antisense lncRNA gene Chr1:164842968-164845812 (-)
AKR/J MGP_AKRJ_G0002742
 antisense lncRNA gene Chr1:169810906-169813750 (-)
BALB/cJ MGP_BALBcJ_G0002748
 antisense lncRNA gene Chr1:165312177-165315021 (-)
C3H/HeJ MGP_C3HHeJ_G0002706
 antisense lncRNA gene Chr1:170026766-170029609 (-)
C57BL/6NJ MGP_C57BL6NJ_G0002891
 antisense lncRNA gene Chr1:177582855-177585699 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002438
 antisense lncRNA gene Chr1:156700772-156703656 (-)
CAST/EiJ MGP_CASTEiJ_G0002679
 antisense lncRNA gene Chr1:169624529-169627390 (-)
CBA/J MGP_CBAJ_G0002702
 antisense lncRNA gene Chr1:183907190-183910034 (-)
DBA/2J MGP_DBA2J_G0002708
 antisense lncRNA gene Chr1:163706478-163709339 (-)
FVB/NJ MGP_FVBNJ_G0002728
 antisense lncRNA gene Chr1:162137462-162140313 (-)
LP/J MGP_LPJ_G0002786
 antisense lncRNA gene Chr1:172913511-172916355 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002718
 antisense lncRNA gene Chr1:191343511-191346357 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0002895
 antisense lncRNA gene Chr1:169673676-169676520 (-)
PWK/PhJ MGP_PWKPhJ_G0002636
 antisense lncRNA gene Chr1:162913476-162916337 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002587
 antisense lncRNA gene Chr1:168511065-168513947 (-)
WSB/EiJ MGP_WSBEiJ_G0002708
 antisense lncRNA gene Chr1:169806198-169809041 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    710
  • Tissues
    1
  • cDNA Data
    1
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    22
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000091393 Ensembl Gene Model | MGI Sequence Detail 2845 C57BL/6J ±  kb
transcript ENSMUST00000168347 Ensembl | MGI Sequence Detail 2845 Not Applicable  
polypeptide Q8BST1 UniProt | EBI | MGI Sequence Detail 271 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    Genomic 2
    cDNA 1
References
more
  • Summaries
    All 11
    Developmental Gene Expression 1
    Phenotypes 2
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory