Ajm1 MGI Mouse Gene Detail - MGI:2685842 - apical junction component 1

Symbol

Ajm1
Name

apical junction component 1
Synonyms

Gm996, LOC381353

Feature Type

protein coding gene
IDs

MGI:2685842
NCBI Gene: 381353
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr2:25465428-25471760 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 17.44 cM
Mapping Data

1 experiment

SNPs within 2kb

124 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685842	protein coding gene	Chr2:25465428-25471769 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0025457	protein coding gene	Chr2:23478224-23484565 (-)
A/J	MGP_AJ_G0025434	protein coding gene	Chr2:22563816-22570163 (-)
AKR/J	MGP_AKRJ_G0025404	protein coding gene	Chr2:23332532-23338879 (-)
BALB/cJ	MGP_BALBcJ_G0025430	protein coding gene	Chr2:22684636-22690977 (-)
C3H/HeJ	MGP_C3HHeJ_G0025191	protein coding gene	Chr2:23263240-23269581 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0025874	protein coding gene	Chr2:24216879-24223220 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023285	protein coding gene	Chr2:21474545-21480934 (-)
CAST/EiJ	MGP_CASTEiJ_G0024654	protein coding gene	Chr2:23130101-23136542 (-)
CBA/J	MGP_CBAJ_G0025169	protein coding gene	Chr2:25057509-25063850 (-)
DBA/2J	MGP_DBA2J_G0025302	protein coding gene	Chr2:22404897-22411244 (-)
FVB/NJ	MGP_FVBNJ_G0025264	protein coding gene	Chr2:22152168-22163972 (-)
LP/J	MGP_LPJ_G0025388	protein coding gene	Chr2:23415722-23422063 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025295	protein coding gene	Chr2:25250497-25256844 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025933	protein coding gene	Chr2:23273369-23279710 (-)
PWK/PhJ	MGP_PWKPhJ_G0024402	protein coding gene	Chr2:22225690-22232037 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0024202	protein coding gene	Chr2:23416593-23423025 (-)
WSB/EiJ	MGP_WSBEiJ_G0024723	protein coding gene	Chr2:23343617-23349956 (-)

Human Ortholog

AJM1, apical junction component 1 homolog

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

AJM1, apical junction component 1 homolog
Synonyms

ajm-1, C9orf172
Links

HGNC:37284

NCBI Gene ID: 389813

neXtProt AC: NX_C9J069

UniProt: C9J069
Chr Location

9q34.3; chr9:136842478-136848801 (+) GRCh38

MGI Vertebrate Homology

Ajm1 stringent orthology
1 human;1 mouse;1 rat;2 zebrafish
HCOP

vertebrate homology predictions: AJM1
Gene Tree

Ajm1

less

Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Endonuclease-mediated

1
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

33 strains or lines available

less

All GO Annotations

7
GO References

3

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

9

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas
Other Vertebrate Links

Xenbase ajm1

less

All Sequences

42
RefSeq

4
UniProt

2
CCDS

CCDS50532.1

Ensembl

ENSMUSG00000029419 (Evidence)
NCBI Gene

381353

			Length	Strain/Species	Flank
genomic	381353	NCBI Gene Model \| MGI Sequence Detail	6333	C57BL/6J	± kb
transcript	NM_001005424	RefSeq \| MGI Sequence Detail	4901	C57BL/6
polypeptide	A2AJA9	UniProt \| EBI \| MGI Sequence Detail	974	Not Applicable

less

UniProt

2 Sequences
Protein Ontology

PR:000059727 apical junction component 1 homolog

(term hierarchy)
InterPro Domains

IPR038825 Apical junction component
GlyGen

A2AJA9 5 sites, 1 O-linked glycan (5 sites)

less

All nucleic 9

cDNA 9

Microarray probesets 6

less

MGI:6156100

Summaries

All 20

Gene Ontology 3

Phenotypes 1
Earliest

J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903

TSS for Ajm1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23031	Chr2:25471704-25471770 (-)	23 bp
Tssr23030	Chr2:25471654-25471668 (-)	99 bp
Tssr23029	Chr2:25471628-25471637 (-)	127 bp
Tssr23028	Chr2:25470251-25470266 (-)	1,501 bp
Tssr23027	Chr2:25470227-25470242 (-)	1,525 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24