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Clec2m Gene Detail
Summary
  • Symbol
    Clec2m
  • Name
    C-type lectin domain family 2, member m
  • Synonyms
    4922502D21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685920
    NCBI Gene: 381816
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:129299127-129308759 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 63.25 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    471 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685920
 protein coding gene Chr6:129299127-129308770 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031343
 protein coding gene Chr6:132985460-132995088 (-)
A/J MGP_AJ_G0031314
 protein coding gene Chr6:127893924-127903618 (-)
AKR/J MGP_AKRJ_G0031242
 protein coding gene Chr6:131391813-131401436 (-)
BALB/cJ MGP_BALBcJ_G0031321
 protein coding gene Chr6:127543157-127552792 (-)
C3H/HeJ MGP_C3HHeJ_G0031045
 protein coding gene Chr6:131580026-131589653 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031780
 protein coding gene Chr6:136479259-136488875 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028926
 protein coding gene Chr6:125401293-125411396 (-)
CAST/EiJ MGP_CASTEiJ_G0030423
 protein coding gene Chr6:131806990-131816592 (-)
CBA/J MGP_CBAJ_G0031005
 protein coding gene Chr6:141842198-141851847 (-)
DBA/2J MGP_DBA2J_G0031162
 protein coding gene Chr6:126848503-126858415 (-)
FVB/NJ MGP_FVBNJ_G0031112
 protein coding gene Chr6:125730221-125740139 (-)
LP/J MGP_LPJ_G0031242
 protein coding gene Chr6:133197056-133206830 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031150
 protein coding gene Chr6:145695046-145704654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031813
 protein coding gene Chr6:131456843-131466482 (-)
PWK/PhJ MGP_PWKPhJ_G0030141
 protein coding gene Chr6:125129257-125139032 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029970
 protein coding gene Chr6:129475418-129485046 (-)
WSB/EiJ MGP_WSBEiJ_G0030511
 protein coding gene Chr6:131873514-131883122 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    24
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047720 Ensembl Gene Model | MGI Sequence Detail 9633 C57BL/6J ±  kb
transcript ENSMUST00000051283 Ensembl | MGI Sequence Detail 1582 Not Applicable  
polypeptide ENSMUSP00000062024 Ensembl | MGI Sequence Detail 189 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR016187 C-type lectin fold
    IPR001304 C-type lectin-like
    IPR016186 C-type lectin-like/link domain superfamily
    IPR051527 Killer cell lectin-like receptor subfamily B
    IPR033992 Natural killer cell receptor-like, C-type lectin-like domain
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 5
Other
Accession IDs
less
MGI:6331110
References
more
  • Summaries
    All 21
    Phenotypes 3
  • Earliest
    J:97250 Hong S, et al., Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. J Biol Chem. 2005 Mar 4;280(9):7685-93
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory