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Spef1l Gene Detail
Summary
  • Symbol
    Spef1l
  • Name
    sperm flagellar 1 like
  • Synonyms
    6430531B16Rik, LOC381933
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685939
    NCBI Gene: 381933
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:139552216-139558668 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 84.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685939
 protein coding gene Chr7:139552211-139558668 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033156
 protein coding gene Chr7:145048051-145054462 (-)
A/J MGP_AJ_G0033138
 protein coding gene Chr7:140928949-140939454 (-)
AKR/J MGP_AKRJ_G0033070
 protein coding gene Chr7:144766024-144774430 (-)
BALB/cJ MGP_BALBcJ_G0033139
 protein coding gene Chr7:140669089-140675702 (-)
C3H/HeJ MGP_C3HHeJ_G0032853
 protein coding gene Chr7:144561307-144569134 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033650
 protein coding gene Chr7:150391146-150397441 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030623
 protein coding gene Chr7:142055628-142062292 (-)
CAST/EiJ MGP_CASTEiJ_G0032183
 protein coding gene Chr7:136866020-136873853 (-)
CBA/J MGP_CBAJ_G0032826
 protein coding gene Chr7:155458540-155467961 (-)
DBA/2J MGP_DBA2J_G0032978
 protein coding gene Chr7:138882647-138889208 (-)
FVB/NJ MGP_FVBNJ_G0032931
 protein coding gene Chr7:138770958-138777653 (-)
LP/J MGP_LPJ_G0033072
 protein coding gene Chr7:146601009-146610449 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032963
 protein coding gene Chr7:156124451-156131527 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033670
 protein coding gene Chr7:143763173-143770525 (-)
PWK/PhJ MGP_PWKPhJ_G0031889
 protein coding gene Chr7:132077812-132084456 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031734
 protein coding gene Chr7:130601977-130608404 (-)
WSB/EiJ MGP_WSBEiJ_G0032294
 protein coding gene Chr7:144663190-144671729 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000073795 Ensembl Gene Model | MGI Sequence Detail 6453 C57BL/6J ±  kb
transcript ENSMUST00000097970 Ensembl | MGI Sequence Detail 1161 Not Applicable  
polypeptide ENSMUSP00000095584 Ensembl | MGI Sequence Detail 307 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR001715 Calponin homology domain
    IPR036872 CH domain superfamily
    IPR010441 CH-like domain in sperm protein
    IPR052111 Spermatogenesis and Ciliary Microtubule-associated Protein
Molecular
Reagents
less
  • All nucleic 7
    Genomic 1
    cDNA 6

    Microarray probesets 1
Other
Accession IDs
less
MGI:6331223
References
more
  • Summaries
    All 22
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory