Gm1401 Pseudogene Detail

Summary

• Symbol
  Gm1401
• Name
  predicted gene 1401
• Synonyms
  LOC384363

• Feature Type
  pseudogene
• IDs
  MGI:2686247
  NCBI Gene: 102634733
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:33224263-33225034 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 14.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686247	pseudogene	Chr6:33224203-33226008 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013402	pseudogene	Chr6:31261015-31261786 (-)
A/J	MGP_AJ_G0013386	pseudogene	Chr6:29939583-29940354 (-)
AKR/J	MGP_AKRJ_G0013349	pseudogene	Chr6:30938285-30939056 (-)
BALB/cJ	MGP_BALBcJ_G0013364	pseudogene	Chr6:30092677-30093448 (-)
C3H/HeJ	MGP_C3HHeJ_G0013215	pseudogene	Chr6:30915337-30916108 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013745	pseudogene	Chr6:32058492-32059263 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011851	pseudogene	Chr6:28050302-28051291 (-)
CAST/EiJ	MGP_CASTEiJ_G0012926	pseudogene	Chr6:30703154-30703937 (-)
CBA/J	MGP_CBAJ_G0013182	pseudogene	Chr6:33309747-33310518 (-)
DBA/2J	MGP_DBA2J_G0013266	pseudogene	Chr6:29824550-29825321 (-)
FVB/NJ	MGP_FVBNJ_G0013263	pseudogene	Chr6:29608275-29609046 (-)
LP/J	MGP_LPJ_G0013333	pseudogene	Chr6:31389410-31390181 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013280	pseudogene	Chr6:35650949-35651720 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013741	pseudogene	Chr6:30831650-30832421 (-)
PWK/PhJ	MGP_PWKPhJ_G0012738	pseudogene	Chr6:29412679-29413462 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012519	pseudogene	Chr6:30483196-30484204 (-)
WSB/EiJ	MGP_WSBEiJ_G0012966	pseudogene	Chr6:30732306-30733077 (-)

Homology

• Gene Tree
  Gm1401
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082217 (Evidence)
• NCBI Gene
  102634733

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082217	Ensembl Gene Model | MGI Sequence Detail	772	C57BL/6J
transcript	ENSMUST00000122048	Ensembl | MGI Sequence Detail	772	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm1401:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60220	Chr6:33225810-33225829 (-)	-786 bp