6430573P05Rik Gene Detail

Summary

• Symbol
  6430573P05Rik
• Name
  RIKEN cDNA 6430573P05 gene
• Synonyms
  LOC381455

• Feature Type
  lncRNA gene
• IDs
  MGI:2686494
  NCBI Gene: 115489693
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:79194480-79197155 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686494	lncRNA gene	Chr3:79194162-79197155 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006214	lincRNA gene	Chr3:78952715-78955386 (+)
A/J	MGP_AJ_G0006206	lincRNA gene	Chr3:76398655-76401326 (+)
AKR/J	MGP_AKRJ_G0006182	lincRNA gene	Chr3:78146660-78149337 (+)
BALB/cJ	MGP_BALBcJ_G0006182	lincRNA gene	Chr3:76425703-76428380 (+)
C3H/HeJ	MGP_C3HHeJ_G0006132	lincRNA gene	Chr3:78485694-78488365 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006345	lincRNA gene	Chr3:81991279-81993954 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005652	lincRNA gene	Chr3:72038733-72041409 (+)
CAST/EiJ	MGP_CASTEiJ_G0006066	lincRNA gene	Chr3:78537682-78540353 (+)
CBA/J	MGP_CBAJ_G0006117	lincRNA gene	Chr3:84687718-84690389 (+)
DBA/2J	MGP_DBA2J_G0006136	lincRNA gene	Chr3:75959123-75961800 (+)
FVB/NJ	MGP_FVBNJ_G0006160	lincRNA gene	Chr3:74300236-74302907 (+)
LP/J	MGP_LPJ_G0006219	lincRNA gene	Chr3:79939185-79941856 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006150	lincRNA gene	Chr3:90964262-90966933 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006349	lincRNA gene	Chr3:77986400-77989071 (+)
PWK/PhJ	MGP_PWKPhJ_G0006011	lincRNA gene	Chr3:75701642-75704312 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005919	lincRNA gene	Chr3:77136126-77138831 (+)
WSB/EiJ	MGP_WSBEiJ_G0006113	lincRNA gene	Chr3:78320235-78322906 (+)

Homology

• Gene Tree
  6430573P05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 6430573P05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  4

• Ensembl
  ENSMUSG00000102545 (Evidence)
• NCBI Gene
  115489693

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102545	Ensembl Gene Model | MGI Sequence Detail	2676	C57BL/6J
transcript	ENSMUST00000195547	Ensembl | MGI Sequence Detail	2457	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;