C130046K22Rik Gene Detail

Summary

• Symbol
  C130046K22Rik
• Name
  RIKEN cDNA C130046K22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3026935
  NCBI Gene: 399609
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:103588542-103614774 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 67.45 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  746 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026935	lncRNA gene	Chr11:103588542-103616399 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015211	unclassified non-coding RNA gene	Chr11:106800765-106826781 (+)
A/J	MGP_AJ_G0015185	unclassified non-coding RNA gene	Chr11:102259612-102284930 (+)
AKR/J	MGP_AKRJ_G0015148	unclassified non-coding RNA gene	Chr11:105403486-105428577 (+)
BALB/cJ	MGP_BALBcJ_G0015147	unclassified non-coding RNA gene	Chr11:102699176-102724230 (+)
C3H/HeJ	MGP_C3HHeJ_G0014971	unclassified non-coding RNA gene	Chr11:105632750-105659168 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015604	unclassified non-coding RNA gene	Chr11:110109786-110134884 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013347	unclassified non-coding RNA gene	Chr11:99671497-99697620 (+)
CAST/EiJ	MGP_CASTEiJ_G0014524	unclassified non-coding RNA gene	Chr11:106651470-106677091 (+)
CBA/J	MGP_CBAJ_G0014950	unclassified non-coding RNA gene	Chr11:114668535-114693629 (+)
DBA/2J	MGP_DBA2J_G0015043	unclassified non-coding RNA gene	Chr11:101757768-101782881 (+)
FVB/NJ	MGP_FVBNJ_G0015054	unclassified non-coding RNA gene	Chr11:101280075-101305431 (+)
LP/J	MGP_LPJ_G0015124	unclassified non-coding RNA gene	Chr11:107288095-107314871 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015081	unclassified non-coding RNA gene	Chr11:114015906-114041352 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015643	unclassified non-coding RNA gene	Chr11:105787426-105812515 (+)
PWK/PhJ	MGP_PWKPhJ_G0014316	unclassified non-coding RNA gene	Chr11:102837658-102863492 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014103	unclassified non-coding RNA gene	Chr11:105540031-105565674 (+)
WSB/EiJ	MGP_WSBEiJ_G0014627	unclassified non-coding RNA gene	Chr11:105792460-105817547 (+)

Homology

• Gene Tree
  C130046K22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  3
• Targeted
  1
• Genomic Mutations
  1 involving C130046K22Rik
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  3

• Ensembl
  ENSMUSG00000085154 (Evidence)
• NCBI Gene
  399609

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085154	Ensembl Gene Model | MGI Sequence Detail	26233	C57BL/6J
transcript	ENSMUST00000154471	Ensembl | MGI Sequence Detail	3317	Not Applicable

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for C130046K22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105355	Chr11:103588147-103588166 (+)	-385 bp
Tssr105356	Chr11:103588537-103588606 (+)	30 bp