Trav13-5 Gene Detail

Summary

• Symbol
  Trav13-5
• Name
  T cell receptor alpha variable 13-5
• Synonyms
  B230359F08Rik

• Feature Type
  gene segment
• IDs
  MGI:3026946
  NCBI Gene: 219060
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54032912-54033420 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.52 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026946	gene segment	Chr14:54032814-54033420 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002565	gene segment	Chr14:47698262-47698868 (+)
A/J	MGP_AJ_G0002536	gene segment	Chr14:46799337-46799943 (+)
AKR/J	MGP_AKRJ_G0002527	gene segment	Chr14:48490846-48491452 (+)
BALB/cJ	MGP_BALBcJ_G0002522	gene segment	Chr14:46778090-46778696 (+)
C3H/HeJ	MGP_C3HHeJ_G0002489	gene segment	Chr14:48172721-48173327 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002663	gene segment	Chr14:50153092-50153698 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002233	gene segment	Chr14:45243530-45244122 (+)
CAST/EiJ	MGP_CASTEiJ_G0002475	gene segment	Chr14:44424592-44425599 (+)
CBA/J	MGP_CBAJ_G0002488	gene segment	Chr14:51606831-51607437 (+)
DBA/2J	MGP_DBA2J_G0002492	gene segment	Chr14:46533557-46534163 (+)
FVB/NJ	MGP_FVBNJ_G0002520	gene segment	Chr14:46017853-46018459 (+)
LP/J	MGP_LPJ_G0002571	gene segment	Chr14:48732451-48733057 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002495	gene segment	Chr14:51071178-51071784 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002673	gene segment	Chr14:47679946-47681458 (+)
PWK/PhJ	MGP_PWKPhJ_G0002434	gene segment	Chr14:43079289-43079884 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002386	gene segment	Chr14:43656315-43656909 (+)
WSB/EiJ	MGP_WSBEiJ_G0002490	gene segment	Chr14:47990903-47992121 (+)

Homology

• Human Ortholog
  TRAV22, T cell receptor alpha variable 22

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV22, T cell receptor alpha variable 22
  
• Synonyms
  TCRAV13S1, TCRAV22S1
• Links
  HGNC:12119

  NCBI Gene ID: 28661

  UniProt: A0A0B4J277

  
  
• Chr Location
  14q11.2; chr14:22070557-22071208 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav13-5 stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV22
• Gene Tree
  Trav13-5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav13-5
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087666 (Evidence)
• NCBI Gene
  219060

Representative Sequences			Length	Strain/Species
genomic	219060	NCBI Gene Model | MGI Sequence Detail	509	C57BL/6J
transcript	AK153755	GenBank | ENA | DDBJ | MGI Sequence Detail	2614	C57BL/6J
polypeptide	A0A0B4J1K3	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051896 T cell receptor alpha variable region

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:6331098

References

• Summaries
  All 17

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563