C730045M19Rik Gene Detail

Summary

• Symbol
  C730045M19Rik
• Name
  RIKEN cDNA C730045M19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3026961
  NCBI Gene: 399582
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:115177829-115179143 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026961	lncRNA gene	Chr5:115177829-115179143 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001711	unclassified gene	Chr5:117856430-117857744 (+)
A/J	MGP_AJ_G0001688	unclassified gene	Chr5:113192003-113193317 (+)
AKR/J	MGP_AKRJ_G0001675	unclassified gene	Chr5:116797203-116798517 (+)
BALB/cJ	MGP_BALBcJ_G0001685	unclassified gene	Chr5:114588893-114590207 (+)
C3H/HeJ	MGP_C3HHeJ_G0001663	unclassified gene	Chr5:117323537-117324851 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001805	unclassified gene	Chr5:122410735-122412049 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001478	unclassified gene	Chr5:107987478-107988772 (+)
CAST/EiJ	MGP_CASTEiJ_G0001635	unclassified gene	Chr5:116241728-116243041 (+)
CBA/J	MGP_CBAJ_G0001655	unclassified gene	Chr5:127090176-127091490 (+)
DBA/2J	MGP_DBA2J_G0001659	unclassified gene	Chr5:113270579-113271893 (+)
FVB/NJ	MGP_FVBNJ_G0001667	unclassified gene	Chr5:112084448-112085762 (+)
LP/J	MGP_LPJ_G0001714	unclassified gene	Chr5:118432507-118433821 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001648	unclassified gene	Chr5:131449283-131450597 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001795	unclassified gene	Chr5:116277093-116278407 (+)
PWK/PhJ	MGP_PWKPhJ_G0001594	unclassified gene	Chr5:111922956-111924270 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001560	unclassified gene	Chr5:113823718-113825150 (+)
WSB/EiJ	MGP_WSBEiJ_G0001655	unclassified gene	Chr5:116858291-116859605 (+)

Homology

• Gene Tree
  C730045M19Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107054 (Evidence)
• NCBI Gene
  399582

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107054	Ensembl Gene Model | MGI Sequence Detail	1315	C57BL/6J
transcript	AK050406	GenBank | ENA | DDBJ | MGI Sequence Detail	1315	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8
• Earliest
  J:57656 Lennon G, et al., WashU-HHMI Mouse EST Project. Database Download. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;