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Haglr Gene Detail
Summary
  • Symbol
    Haglr
  • Name
    Hoxd antisense growth associated long non-coding RNA
  • Synonyms
    6720416L17Rik, Mdgt
Location &
Maps
more
  • Sequence Map
    Chr2:74578766-74593240 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 44.13 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    360 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026978
 bidirectional promoter lncRNA gene Chr2:74578766-74593240 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005942
 lincRNA gene Chr2:75064851-75080355 (-)
A/J MGP_AJ_G0005935
 lincRNA gene Chr2:72129372-72143676 (-)
AKR/J MGP_AKRJ_G0005910
 lincRNA gene Chr2:74084391-74099588 (-)
BALB/cJ MGP_BALBcJ_G0005913
 lincRNA gene Chr2:72316986-72331559 (-)
C3H/HeJ MGP_C3HHeJ_G0005861
 lincRNA gene Chr2:74274965-74288479 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006074
 lincRNA gene Chr2:77301192-77318349 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005407
 lincRNA gene Chr2:69553097-69567393 (-)
CAST/EiJ MGP_CASTEiJ_G0005797
 lincRNA gene Chr2:74589493-74609827 (-)
CBA/J MGP_CBAJ_G0005846
 lincRNA gene Chr2:80128652-80146774 (-)
DBA/2J MGP_DBA2J_G0005867
 lincRNA gene Chr2:71738007-71752220 (-)
FVB/NJ MGP_FVBNJ_G0005892
 lincRNA gene Chr2:71125956-71140419 (-)
LP/J MGP_LPJ_G0005946
 lincRNA gene Chr2:74926650-74941232 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005880
 lincRNA gene Chr2:82032986-82047468 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006071
 lincRNA gene Chr2:74201219-74216381 (-)
PWK/PhJ MGP_PWKPhJ_G0005746
 lincRNA gene Chr2:71667860-71682478 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005657
 lincRNA gene Chr2:74431930-74460617 (-)
WSB/EiJ MGP_WSBEiJ_G0005850
 lincRNA gene Chr2:74639068-74655748 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    37 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation display partial penetrance of postnatal lethality and severe growth retardation.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      33
    • RefSeq
      1
    • UniProt
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 102634678 NCBI Gene Model | MGI Sequence Detail 14475 C57BL/6J ±  kb
    transcript NR_110445 RefSeq | MGI Sequence Detail 2454 C57BL/6  
    polypeptide Q8BSK9 UniProt | EBI | MGI Sequence Detail 125 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 4

      Microarray probesets 2
    References
    more
    • Summaries
      All 50
      Developmental Gene Expression 2
      Gene Ontology 1
      Phenotypes 37
    • Earliest
      J:10491 Davisson MT, et al., The mouse mutation ulnaless on chromosome 2. J Hered. 1990 Mar-Apr;81(2):151-3
    • Latest
      J:309510 Beccari L, et al., Dbx2 regulation in limbs suggests interTAD sharing of enhancers. Dev Dyn. 2021 Sep;250(9):1280-1299
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory