A630014C17Rik Gene Detail

Summary

• Symbol
  A630014C17Rik
• Name
  RIKEN cDNA A630014C17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3026989
  NCBI Gene: 399633
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:52166882-52177006 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 31.86 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  261 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3026989	lncRNA gene	Chr11:52166882-52177006 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002954	antisense lncRNA gene	Chr11:51581780-51591904 (+)
A/J	MGP_AJ_G0002931	antisense lncRNA gene	Chr11:49655144-49665266 (+)
AKR/J	MGP_AKRJ_G0002912	antisense lncRNA gene	Chr11:51253300-51263424 (+)
BALB/cJ	MGP_BALBcJ_G0002919	antisense lncRNA gene	Chr11:49979903-49990027 (+)
C3H/HeJ	MGP_C3HHeJ_G0002874	antisense lncRNA gene	Chr11:51233507-51243631 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003060	antisense lncRNA gene	Chr11:53148579-53158703 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002603	antisense lncRNA gene	Chr11:47158962-47169090 (+)
CAST/EiJ	MGP_CASTEiJ_G0002845	antisense lncRNA gene	Chr11:51255017-51266440 (+)
CBA/J	MGP_CBAJ_G0002871	antisense lncRNA gene	Chr11:55658350-55668474 (+)
DBA/2J	MGP_DBA2J_G0002878	antisense lncRNA gene	Chr11:49381748-49392135 (+)
FVB/NJ	MGP_FVBNJ_G0002896	antisense lncRNA gene	Chr11:49045393-49055517 (+)
LP/J	MGP_LPJ_G0002953	antisense lncRNA gene	Chr11:52003997-52014121 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002884	antisense lncRNA gene	Chr11:57009949-57020095 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003064	antisense lncRNA gene	Chr11:51302967-51314136 (+)
PWK/PhJ	MGP_PWKPhJ_G0002803	antisense lncRNA gene	Chr11:49877636-49887999 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002752	antisense lncRNA gene	Chr11:51038712-51049859 (+)
WSB/EiJ	MGP_WSBEiJ_G0002874	antisense lncRNA gene	Chr11:50924164-50934309 (+)

Homology

• Gene Tree
  A630014C17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A630014C17Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000086395 (Evidence)
• NCBI Gene
  399633

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086395	Ensembl Gene Model | MGI Sequence Detail	10125	C57BL/6J
transcript	ENSMUST00000150973	Ensembl | MGI Sequence Detail	2984	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for A630014C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101333	Chr11:52166438-52166489 (+)	-418 bp
Tssr101334	Chr11:52170828-52170860 (+)	3,962 bp
Tssr101335	Chr11:52173515-52173532 (+)	6,642 bp