C730036E19Rik Gene Detail

Summary

• Symbol
  C730036E19Rik
• Name
  RIKEN cDNA C730036E19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3028040
  NCBI Gene: 402734
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:151013785-151018096 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  297 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028040	lncRNA gene	Chr1:151013785-151019846 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004996	lincRNA gene	Chr1:155823642-155827956 (+)
A/J	MGP_AJ_G0004978	lincRNA gene	Chr1:149545284-149549607 (+)
AKR/J	MGP_AKRJ_G0004955	lincRNA gene	Chr1:154116305-154120592 (+)
BALB/cJ	MGP_BALBcJ_G0004959	lincRNA gene	Chr1:150080703-150085014 (+)
C3H/HeJ	MGP_C3HHeJ_G0004908	lincRNA gene	Chr1:154297018-154301341 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005109	lincRNA gene	Chr1:161232858-161237169 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004522	lincRNA gene	Chr1:141894010-141898207 (+)
CAST/EiJ	MGP_CASTEiJ_G0004856	lincRNA gene	Chr1:153713731-153718018 (+)
CBA/J	MGP_CBAJ_G0004899	lincRNA gene	Chr1:166913882-166918205 (+)
DBA/2J	MGP_DBA2J_G0004918	lincRNA gene	Chr1:148602442-148606753 (+)
FVB/NJ	MGP_FVBNJ_G0004938	lincRNA gene	Chr1:147057927-147062178 (+)
LP/J	MGP_LPJ_G0004995	lincRNA gene	Chr1:156862966-156867253 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004922	lincRNA gene	Chr1:174620699-174625040 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005114	lincRNA gene	Chr1:153926556-153930870 (+)
PWK/PhJ	MGP_PWKPhJ_G0004808	lincRNA gene	Chr1:147534557-147539002 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004734	lincRNA gene	Chr1:152759051-152763271 (+)
WSB/EiJ	MGP_WSBEiJ_G0004903	lincRNA gene	Chr1:154021511-154025827 (+)

Homology

• Gene Tree
  C730036E19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving C730036E19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000102095 (Evidence)
• NCBI Gene
  402734

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102095	Ensembl Gene Model | MGI Sequence Detail	4312	C57BL/6J
transcript	ENSMUST00000188305	Ensembl | MGI Sequence Detail	1102	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:220701 Li P, et al., A liver-enriched long non-coding RNA, lncLSTR, regulates systemic lipid metabolism in mice. Cell Metab. 2015 Mar 3;21(3):455-67