A330087D11Rik Gene Detail

Summary

• Symbol
  A330087D11Rik
• Name
  RIKEN cDNA A330087D11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3028066
  NCBI Gene: 402759
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:29268328-29273353 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028066	lncRNA gene	Chr7:29268328-29273353 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015660	unclassified non-coding RNA gene	Chr7:28503189-28508204 (-)
A/J	MGP_AJ_G0015638	unclassified non-coding RNA gene	Chr7:27758295-27762415 (-)
AKR/J	MGP_AKRJ_G0015601	unclassified non-coding RNA gene	Chr7:28477641-28481685 (-)
BALB/cJ	MGP_BALBcJ_G0015600	unclassified non-coding RNA gene	Chr7:27943206-27947195 (-)
C3H/HeJ	MGP_C3HHeJ_G0015421	unclassified non-coding RNA gene	Chr7:28883681-28887745 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016053	unclassified non-coding RNA gene	Chr7:29415272-29420989 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014977	unclassified non-coding RNA gene	Chr7:22151193-22155288 (-)
CBA/J	MGP_CBAJ_G0015402	unclassified non-coding RNA gene	Chr7:30794486-30801433 (-)
DBA/2J	MGP_DBA2J_G0015497	unclassified non-coding RNA gene	Chr7:27493115-27497139 (-)
FVB/NJ	MGP_FVBNJ_G0015504	unclassified non-coding RNA gene	Chr7:27607982-27611714 (-)
LP/J	MGP_LPJ_G0015577	unclassified non-coding RNA gene	Chr7:28808131-28813303 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015526	unclassified non-coding RNA gene	Chr7:30135944-30139948 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016095	unclassified non-coding RNA gene	Chr7:27961671-27965824 (-)
PWK/PhJ	MGP_PWKPhJ_G0014759	unclassified non-coding RNA gene	Chr7:22549520-22553660 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014548	unclassified non-coding RNA gene	Chr7:18980774-18984840 (-)
WSB/EiJ	MGP_WSBEiJ_G0015082	unclassified non-coding RNA gene	Chr7:28350624-28355901 (-)

Homology

• Gene Tree
  A330087D11Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000100111 (Evidence)
• NCBI Gene
  402759

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100111	Ensembl Gene Model | MGI Sequence Detail	5026	C57BL/6J
transcript	ENSMUST00000187265	Ensembl | MGI Sequence Detail	1334	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;