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Clec2e Gene Detail
Summary
  • Symbol
    Clec2e
  • Name
    C-type lectin domain family 2, member e
  • Synonyms
    Clra
  • Feature Type
    protein coding gene
  • IDs
    MGI:3028921
    NCBI Gene: 232409
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:129068961-129077876 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 63.13 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    384 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3028921
 protein coding gene Chr6:129068779-129077876 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031340
 protein coding gene Chr6:132751843-132760494 (-)
A/J MGP_AJ_G0031311
 protein coding gene Chr6:127665201-127673982 (-)
AKR/J MGP_AKRJ_G0031239
 protein coding gene Chr6:131138422-131147202 (-)
BALB/cJ MGP_BALBcJ_G0031318
 protein coding gene Chr6:127285088-127294172 (-)
C3H/HeJ MGP_C3HHeJ_G0031042
 protein coding gene Chr6:131328650-131337793 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031777
 protein coding gene Chr6:136230466-136239268 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028923
 protein coding gene Chr6:125188819-125198073 (-)
CAST/EiJ MGP_CASTEiJ_G0030421
 protein coding gene Chr6:131538122-131553623 (-)
CBA/J MGP_CBAJ_G0031003
 protein coding gene Chr6:141571057-141581056 (-)
DBA/2J MGP_DBA2J_G0031160
 protein coding gene Chr6:126605441-126617228 (-)
FVB/NJ MGP_FVBNJ_G0031109
 protein coding gene Chr6:125502620-125511574 (-)
LP/J MGP_LPJ_G0031239
 protein coding gene Chr6:132936965-132945637 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031148
 protein coding gene Chr6:145412717-145422146 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031810
 protein coding gene Chr6:131206504-131216768 (-)
PWK/PhJ MGP_PWKPhJ_G0030137
 protein coding gene Chr6:124904260-124913205 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029967
 protein coding gene Chr6:129234444-129245575 (-)
WSB/EiJ MGP_WSBEiJ_G0030509
 protein coding gene Chr6:131615778-131625721 (-)



Homology
more
  • Human Ortholog
    CLEC2D, C-type lectin domain family 2 member D
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLEC2D, C-type lectin domain family 2 member D
  • Synonyms
    CLAX, LLT1, OCIL
  • Links
    NCBI Gene ID: 29121
    neXtProt AC: NX_Q9UHP7
    UniProt: Q9UHP7

  • Chr Location
    12p13.31; chr12:9664969-9699553 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    749
  • Tissues
    8
  • cDNA Data
    6
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030155 Ensembl Gene Model | MGI Sequence Detail 8916 C57BL/6J ±  kb
transcript ENSMUST00000032258 Ensembl | MGI Sequence Detail 2099 Not Applicable  
polypeptide ENSMUSP00000032258 Ensembl | MGI Sequence Detail 216 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 26
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:93300 Blackshaw S, et al., Genomic analysis of mouse retinal development. PLoS Biol. 2004 Oct;2(9):E247
  • Latest
    J:296573 Woo V, et al., Microbiota Inhibit Epithelial Pathogen Adherence by Epigenetically Regulating C-Type Lectin Expression. Front Immunol. 2019;10:928
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory