Or14c42-ps1 Pseudogene Detail

Summary

• Symbol
  Or14c42-ps1
• Name
  olfactory receptor family 14 subfamily C member 42, pseudogene 1
• Synonyms
  GA_x6K02T2NHDJ-9553029-9552092, MOR220-5_p, Olfr296-ps1

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3030130
  NCBI Gene: 404375
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:86210942-86211871 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 48.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030130	polymorphic pseudogene	Chr7:86208686-86211886 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040628	pseudogene	Chr7:88835121-88836046 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0040256	pseudogene	Chr7:89155624-89156549 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0037458	pseudogene	Chr7:89247248-89248175 (-)
CAST/EiJ	MGP_CASTEiJ_G0039300	pseudogene	Chr7:80739882-80740809 (+)
CBA/J	MGP_CBAJ_G0040223	pseudogene	Chr7:95402533-95403458 (+)
DBA/2J	MGP_DBA2J_G0040435	pseudogene	Chr7:85222066-85222991 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040472	pseudogene	Chr7:90099786-90100711 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040354	pseudogene	Chr7:96077041-96077966 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041365	pseudogene	Chr7:88049095-88050020 (+)
PWK/PhJ	MGP_PWKPhJ_G0038961	pseudogene	Chr7:78356906-78357833 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038666	pseudogene	Chr7:75412520-75413447 (+)
WSB/EiJ	MGP_WSBEiJ_G0039551	pseudogene	Chr7:88844510-88845437 (+)

Homology

• Gene Tree
  Or14c42-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  3
• Genomic Mutations
  4 involving Or14c42-ps1
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  3

• Ensembl
  ENSMUSG00000092372 (Evidence)
• NCBI Gene
  404375

Representative Sequences			Length	Strain/Species
genomic	404375	NCBI Gene Model | MGI Sequence Detail	930	C57BL/6J
transcript	NM_001429713	RefSeq | MGI Sequence Detail	930	Not Specified
polypeptide	NP_001416642	RefSeq | MGI Sequence Detail	309	Not Specified

Other
Accession IDs

MGI:7276928

References

• Summaries
  All 31

  Phenotypes 24
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42