Or1e27-ps1 Pseudogene Detail

Summary

• Symbol
  Or1e27-ps1
• Name
  olfactory receptor family 1 subfamily E member 27, pseudogene 1
• Synonyms
  GA_x6K02T2P1NL-3823071-3824002, MOR135-17, Olfr387-ps1

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3030221
  NCBI Gene: 258210
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:73555433-73556366 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030221	polymorphic pseudogene	Chr11:73550875-73556693 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010144	polymorphic pseudogene	Chr11:76632360-76639896 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0010117	polymorphic pseudogene	Chr11:73977893-73985344 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Or1e27-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Or1e27-ps1
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  3

• Ensembl
  ENSMUSG00000061246 (Evidence)
• NCBI Gene
  258210

Representative Sequences			Length	Strain/Species
genomic	258210	NCBI Gene Model | MGI Sequence Detail	934	C57BL/6J
transcript	NM_001429834	RefSeq | MGI Sequence Detail	1246	Not Specified
polypeptide	NP_001416763	RefSeq | MGI Sequence Detail	310	Not Specified

Other
Accession IDs

MGI:7277019

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42

TSS for Or1e27-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102898	Chr11:73553828-73553831 (+)	-1,603 bp