Or1e1d-ps1 Pseudogene Detail

Summary

• Symbol
  Or1e1d-ps1
• Name
  olfactory receptor family 1 subfamily E member 1D, pseudogene 1
• Synonyms
  GA_x6K02T2P1NL-4083149-4084087, MOR135-19, Olfr396-ps1

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3030230
  NCBI Gene: 258208
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:73818833-73819768 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 45.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3030230	polymorphic pseudogene	Chr11:73815828-73820394 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009931	polymorphic pseudogene	Chr11:74616446-74620390 (+)
A/J	MGP_AJ_G0009916	polymorphic pseudogene	Chr11:71845268-71849252 (+)
AKR/J	MGP_AKRJ_G0009900	polymorphic pseudogene	Chr11:74003425-74007369 (+)
BALB/cJ	MGP_BALBcJ_G0009901	polymorphic pseudogene	Chr11:72125882-72130306 (+)
C3H/HeJ	MGP_C3HHeJ_G0009833	polymorphic pseudogene	Chr11:74003293-74007237 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010146	polymorphic pseudogene	Chr11:76920819-76924762 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008945	polymorphic pseudogene	Chr11:68866988-68941140 (+)
CAST/EiJ	MGP_CASTEiJ_G0009650	polymorphic pseudogene	Chr11:74385386-74390420 (+)
CBA/J	MGP_CBAJ_G0009807	polymorphic pseudogene	Chr11:80278018-80281962 (+)
DBA/2J	MGP_DBA2J_G0009834	polymorphic pseudogene	Chr11:71440105-71443948 (+)
FVB/NJ	MGP_FVBNJ_G0009851	polymorphic pseudogene	Chr11:70991125-70995068 (+)
LP/J	MGP_LPJ_G0009928	polymorphic pseudogene	Chr11:75129993-75133937 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009817	polymorphic pseudogene	Chr11:80836509-80841466 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010119	polymorphic pseudogene	Chr11:74222194-74226178 (+)
PWK/PhJ	MGP_PWKPhJ_G0009573	polymorphic pseudogene	Chr11:72130750-72134742 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009406	polymorphic pseudogene	Chr11:73803162-73807132 (+)
WSB/EiJ	MGP_WSBEiJ_G0009754	polymorphic pseudogene	Chr11:73988683-73993261 (+)

Homology

• Human Ortholog
  OR1E1, olfactory receptor family 1 subfamily E member 1

• Vertebrate Orthologs
  4

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  OR1E1, olfactory receptor family 1 subfamily E member 1
  
• Synonyms
  HGM071, OR13-66, OR17-2, OR17-32, OR1E5, OR1E6, OR1E8P, OR1E9P, OST547
• Links
  HGNC:8189

  NCBI Gene ID: 8387

  neXtProt AC: NX_P30953

  UniProt: P30953

  
  
• Chr Location
  17p13.3; chr17:3397104-3398410 (-)  GRCh38

---

• Human Ortholog
  OR1E2, olfactory receptor family 1 subfamily E member 2
  
• Synonyms
  OR17-135, OR17-136, OR17-93, OR1E4, OR1E7, OST529
• Links
  HGNC:8190

  NCBI Gene ID: 8388

  neXtProt AC: NX_P47887

  UniProt: P47887

  
  
• Chr Location
  17p13.2; chr17:3432870-3433841 (-)  GRCh38

---

• Human Ortholog
  OR1E3, olfactory receptor family 1 subfamily E member 3 (gene/pseudogene)
  
• Synonyms
  OR17-210, OR1E3P
• Links
  HGNC:8191

  NCBI Gene ID: 8389

  UniProt: Q8WZA6

  
  
• Chr Location
  17p13.3; chr17:3116327-3117474 (+)  GRCh38

---

• MGI Vertebrate Homology
  Or1e1d-ps1 stringent orthology
  3 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: OR1E1, OR1E2, OR1E3
• Gene Tree
  Or1e1d-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Or1e1d-ps1
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000108605 (Evidence)
• NCBI Gene
  258208

Representative Sequences			Length	Strain/Species
genomic	258208	NCBI Gene Model | MGI Sequence Detail	936	C57BL/6J
transcript	NR_190800	RefSeq | MGI Sequence Detail	1149	C57BL/6
polypeptide	NP_001416748	RefSeq | MGI Sequence Detail	312	Not Specified

Other
Accession IDs

MGI:7277029

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42