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Or1a1 Gene Detail
Summary
  • Symbol
    Or1a1
  • Name
    olfactory receptor family 1 subfamily A member 1
  • Synonyms
    GA_x6K02T2P1NL-4348188-4349129, IA7, MOR125-5_p, Olfr403
  • Feature Type
    protein coding gene
  • IDs
    MGI:3030237
    NCBI Gene: 404316
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr11:74086331-74087272 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 45.76 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3030237
 protein coding gene Chr11:74077075-74089438 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018687
 protein coding gene Chr11:74875476-74890247 (+)
A/J MGP_AJ_G0018653
 protein coding gene Chr11:72106746-72116859 (+)
AKR/J MGP_AKRJ_G0018623
 protein coding gene Chr11:74264602-74274749 (+)
BALB/cJ MGP_BALBcJ_G0018627
 protein coding gene Chr11:72407619-72419508 (+)
C3H/HeJ MGP_C3HHeJ_G0018440
 protein coding gene Chr11:74272117-74279075 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019078
 protein coding gene Chr11:77194561-77204778 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016714
 protein coding gene Chr11:69171892-69184699 (+)
CAST/EiJ MGP_CASTEiJ_G0017994
 protein coding gene Chr11:74637617-74644605 (+)
CBA/J MGP_CBAJ_G0018411
 protein coding gene Chr11:80598045-80605017 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0018509
 protein coding gene Chr11:71240076-71249773 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0019118
 protein coding gene Chr11:74471197-74481420 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    OR1A1, olfactory receptor family 1 subfamily A member 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OR1A1, olfactory receptor family 1 subfamily A member 1
  • Synonyms
    OR17-7
  • Links
    NCBI Gene ID: 8383
    neXtProt AC: NX_Q9P1Q5
    UniProt: Q9P1Q5

  • Chr Location
    17p13.3; chr17:3207539-3218896 (+)  GRCh38
  • Human Ortholog
    OR1A2, olfactory receptor family 1 subfamily A member 2
  • Synonyms
    OR17-6
  • Links
    NCBI Gene ID: 26189
    neXtProt AC: NX_Q9Y585
    UniProt: Q9Y585

  • Chr Location
    17p13.3; chr17:3197519-3198448 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 404316 NCBI Gene Model | MGI Sequence Detail 942 C57BL/6J ±  kb
transcript NM_207622 RefSeq | MGI Sequence Detail 942 Not Specified  
polypeptide NP_997505 RefSeq | MGI Sequence Detail 313 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR000725 Olfactory receptor
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
Other
Accession IDs
less
MGI:7277036
References
more
  • Summaries
    All 24
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory