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Or6c200-ps1 Pseudogene Detail
Summary
  • Symbol
    Or6c200-ps1
  • Name
    olfactory receptor family 6 subfamily C member 200, pseudogene 1
  • Synonyms
    GA_x6K02T00F4V-833-1750, GA_x6K02T2PULF-10720146-10719487, Gm6349, MOR115-6_p, Olfr227, Olfr764, Olfr764-ps1
Location &
Maps
more
  • Sequence Map
    Chr10:128869729-128870667 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 77.22 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3030598
 pseudogene Chr10:128868566-128875765 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0039960
 pseudogene Chr10:127572865-127573794 (-)
AKR/J MGP_AKRJ_G0039879
 pseudogene Chr10:131235656-131236585 (-)
BALB/cJ MGP_BALBcJ_G0039937
 pseudogene Chr10:127899725-127900654 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0040515
 pseudogene Chr10:137326135-137337621 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0037074
 pseudogene Chr10:121400917-121401846 (-)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0039715
 pseudogene Chr10:125520158-125521087 (-)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0038369
 pseudogene Chr10:126866411-126874247 (-)
SPRET/EiJ MGP_SPRETEiJ_G0038101
 pseudogene Chr10:130434128-130453762 (-)
WSB/EiJ MGP_WSBEiJ_G0038913
 pseudogene Chr10:131582270-131583132 (-)



Homology
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 622733 NCBI Gene Model | MGI Sequence Detail 939 C57BL/6J ±  kb
polypeptide A0A2I3BQ22 UniProt | EBI | MGI Sequence Detail 326 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR000725 Olfactory receptor
    IPR047132 Olfactory receptor subfamily 6C-like
Molecular
Reagents
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  • Microarray probesets 1
Other
Accession IDs
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MGI:3030061, MGI:3648718, MGI:7277411
References
more
  • Summaries
    All 12
    Gene Ontology 2
  • Earliest
    J:88213 Young JM, et al., Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Genome Biol. 2003;4(11):R71
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory