Or4i1-ps1 Pseudogene Detail

Summary

• Symbol
  Or4i1-ps1
• Name
  olfactory receptor family 4 subfamily I member 1, pseudogene 1
• Synonyms
  GA_x6K02T2Q125-50843245-50842857, Gm5009, Olfr1236-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3031070
  NCBI Gene: 257785
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:89230289-89230624 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.03 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3031070	pseudogene	Chr2:89230175-89232707 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Or4i1-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Or4i1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000111302 (Evidence)
• NCBI Gene
  257785

Representative Sequences			Length	Strain/Species
genomic	257785	NCBI Gene Model | MGI Sequence Detail	336	C57BL/6J

Other
Accession IDs

MGI:3646846, MGI:7276509

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42