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AA386476 Gene Detail
Summary
  • Symbol
    AA386476
  • Name
    expressed sequence AA386476
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3034595
    NCBI Gene: 546058
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:48128426-48136474 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 26.87 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    242 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3034595
 lncRNA gene Chr8:48128426-48138274 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033599
 protein coding gene Chr8:46858218-46859880 (+)
A/J MGP_AJ_G0033581
 protein coding gene Chr8:45025037-45026700 (+)
AKR/J MGP_AKRJ_G0033506
 protein coding gene Chr8:46331820-46333481 (+)
BALB/cJ MGP_BALBcJ_G0033578
 protein coding gene Chr8:45205753-45207418 (+)
C3H/HeJ MGP_C3HHeJ_G0033287
 protein coding gene Chr8:46899889-46901550 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034094
 protein coding gene Chr8:48615554-48617215 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031043
 protein coding gene Chr8:41255456-41257168 (+)
CAST/EiJ MGP_CASTEiJ_G0032613
 protein coding gene Chr8:46347095-46349781 (+)
CBA/J MGP_CBAJ_G0033266
 protein coding gene Chr8:50552660-50554322 (+)
DBA/2J MGP_DBA2J_G0033419
 protein coding gene Chr8:44827502-44829163 (+)
FVB/NJ MGP_FVBNJ_G0033360
 protein coding gene Chr8:44301553-44303214 (+)
LP/J MGP_LPJ_G0033507
 protein coding gene Chr8:46852179-46853841 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033405
 protein coding gene Chr8:50590702-50592367 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034112
 protein coding gene Chr8:46518706-46520368 (+)
PWK/PhJ MGP_PWKPhJ_G0032321
 protein coding gene Chr8:44349402-44351081 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032157
 protein coding gene Chr8:45682879-45684610 (+)
WSB/EiJ MGP_WSBEiJ_G0032729
 protein coding gene Chr8:46777047-46778709 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 546058 NCBI Gene Model | MGI Sequence Detail 8049 C57BL/6J ±  kb
transcript NR_166692 RefSeq | MGI Sequence Detail 8049 C57BL/6  
polypeptide Q8BND0 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Phenotypes 4
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory