AA623943 Gene Detail

Summary

• Symbol
  AA623943
• Name
  expressed sequence AA623943

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3035046
  NCBI Gene: 544808
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:94703445-94704174 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035046	protein coding gene	Chr11:94703445-94708477 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039991	pseudogene	Chr11:97026223-97026964 (-)
A/J	MGP_AJ_G0039995	pseudogene	Chr11:93014219-93014958 (-)
AKR/J	MGP_AKRJ_G0039915	pseudogene	Chr11:95907789-95908528 (-)
BALB/cJ	MGP_BALBcJ_G0039974	pseudogene	Chr11:93462134-93462873 (-)
C3H/HeJ	MGP_C3HHeJ_G0039620	pseudogene	Chr11:95999797-96000536 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0037104	pseudogene	Chr11:90519314-90520020 (-)
CAST/EiJ	MGP_CASTEiJ_G0038729	pseudogene	Chr11:96756744-96757479 (-)
CBA/J	MGP_CBAJ_G0039589	pseudogene	Chr11:104077464-104078203 (-)
DBA/2J	MGP_DBA2J_G0039785	pseudogene	Chr11:92600041-92600780 (-)
FVB/NJ	MGP_FVBNJ_G0039752	pseudogene	Chr11:92015521-92016260 (-)
LP/J	MGP_LPJ_G0039822	pseudogene	Chr11:97443296-97444035 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039734	pseudogene	Chr11:104082565-104083304 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038137	pseudogene	Chr11:95872665-95873373 (-)
WSB/EiJ	MGP_WSBEiJ_G0038950	pseudogene	Chr11:95999575-96000358 (-)

Homology

• Gene Tree
  AA623943
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving AA623943
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000081478 (Evidence)
• NCBI Gene
  544808

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081478	Ensembl Gene Model | MGI Sequence Detail	730	C57BL/6J
transcript	ENSMUST00000121794	Ensembl | MGI Sequence Detail	354	Not Applicable
polypeptide	NP_001359500	RefSeq | MGI Sequence Detail	149	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307