AA645442 Gene Detail

Summary

• Symbol
  AA645442
• Name
  expressed sequence AA645442

• Feature Type
  lncRNA gene
• IDs
  MGI:3035071
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:27216716-27221309 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 19.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035071	lncRNA gene	Chr2:27216716-27221309 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003531	antisense lncRNA gene	Chr2:25303336-25307929 (+)
A/J	MGP_AJ_G0003511	antisense lncRNA gene	Chr2:24352733-24357326 (+)
AKR/J	MGP_AKRJ_G0003490	antisense lncRNA gene	Chr2:25150743-25155336 (+)
BALB/cJ	MGP_BALBcJ_G0003500	antisense lncRNA gene	Chr2:24472927-24477520 (+)
C3H/HeJ	MGP_C3HHeJ_G0003448	antisense lncRNA gene	Chr2:25085741-25090334 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003638	antisense lncRNA gene	Chr2:26159414-26164007 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003148	antisense lncRNA gene	Chr2:23184323-23188909 (+)
CAST/EiJ	MGP_CASTEiJ_G0003411	antisense lncRNA gene	Chr2:24962471-24967060 (+)
CBA/J	MGP_CBAJ_G0003445	antisense lncRNA gene	Chr2:27069756-27074349 (+)
DBA/2J	MGP_DBA2J_G0003453	antisense lncRNA gene	Chr2:24173766-24178359 (+)
FVB/NJ	MGP_FVBNJ_G0003472	antisense lncRNA gene	Chr2:23935537-23940130 (+)
LP/J	MGP_LPJ_G0003526	antisense lncRNA gene	Chr2:25250757-25255349 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003460	antisense lncRNA gene	Chr2:27103716-27108310 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003641	antisense lncRNA gene	Chr2:25081740-25086333 (+)
PWK/PhJ	MGP_PWKPhJ_G0003366	antisense lncRNA gene	Chr2:23965352-23969939 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003311	antisense lncRNA gene	Chr2:25233420-25238007 (+)
WSB/EiJ	MGP_WSBEiJ_G0003446	antisense lncRNA gene	Chr2:25199455-25204051 (+)

Homology

• Gene Tree
  AA645442
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086669 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086669	Ensembl Gene Model | MGI Sequence Detail	4594	C57BL/6J
transcript	ENSMUST00000156020	Ensembl | MGI Sequence Detail	285	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14