AA413626 Pseudogene Detail

Summary

• Symbol
  AA413626
• Name
  expressed sequence AA413626

• Feature Type
  pseudogene
• IDs
  MGI:3035311
  NCBI Gene: 100359413
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:4868516-4868918 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3035311	pseudogene	Chr11:4868510-4869003 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010565	pseudogene	Chr11:1926228-1926721 (+)
A/J	MGP_AJ_G0010558	pseudogene	Chr11:1872203-1872696 (+)
AKR/J	MGP_AKRJ_G0010518	pseudogene	Chr11:1962517-1963010 (+)
BALB/cJ	MGP_BALBcJ_G0010532	pseudogene	Chr11:1846269-1846762 (+)
C3H/HeJ	MGP_C3HHeJ_G0010455	pseudogene	Chr11:1853088-1853581 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010802	pseudogene	Chr11:1992619-1993112 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009475	pseudogene	Chr11:1770930-1771431 (+)
CAST/EiJ	MGP_CASTEiJ_G0010280	pseudogene	Chr11:1821762-1822257 (+)
CBA/J	MGP_CBAJ_G0010427	pseudogene	Chr11:2275181-2275674 (+)
DBA/2J	MGP_DBA2J_G0010457	pseudogene	Chr11:1776795-1777288 (+)
FVB/NJ	MGP_FVBNJ_G0010475	pseudogene	Chr11:1814334-1814827 (+)
LP/J	MGP_LPJ_G0010547	pseudogene	Chr11:2005953-2006446 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010451	pseudogene	Chr11:1925762-1926255 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010780	pseudogene	Chr11:1968372-1968865 (+)
PWK/PhJ	MGP_PWKPhJ_G0010180	pseudogene	Chr11:1788960-1789453 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009996	pseudogene	Chr11:1945377-1945866 (+)
WSB/EiJ	MGP_WSBEiJ_G0010341	pseudogene	Chr11:1837895-1838388 (+)

Homology

• Gene Tree
  AA413626
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000084381 (Evidence)
• NCBI Gene
  100359413

Representative Sequences			Length	Strain/Species
genomic	100359413	NCBI Gene Model | MGI Sequence Detail	403	C57BL/6J
transcript	NR_102683	RefSeq | MGI Sequence Detail	403	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:57656 Lennon G, et al., WashU-HHMI Mouse EST Project. Database Download. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;