A430110L20Rik Gene Detail

Summary

• Symbol
  A430110L20Rik
• Name
  RIKEN cDNA A430110L20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3036249
  NCBI Gene: 329307
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:181053551-181056063 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 84.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3036249	lncRNA gene	Chr1:181053551-181056063 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005052	lincRNA gene	Chr1:187728191-187730703 (+)
A/J	MGP_AJ_G0005034	lincRNA gene	Chr1:180138295-180140809 (+)
AKR/J	MGP_AKRJ_G0005012	lincRNA gene	Chr1:185481179-185483693 (+)
BALB/cJ	MGP_BALBcJ_G0005016	lincRNA gene	Chr1:180767099-180769611 (+)
C3H/HeJ	MGP_C3HHeJ_G0004964	lincRNA gene	Chr1:186270842-186273354 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005165	lincRNA gene	Chr1:193819403-193821915 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004573	lincRNA gene	Chr1:171110954-171113428 (+)
CAST/EiJ	MGP_CASTEiJ_G0004911	lincRNA gene	Chr1:185608995-185611499 (+)
CBA/J	MGP_CBAJ_G0004955	lincRNA gene	Chr1:200985604-200988118 (+)
DBA/2J	MGP_DBA2J_G0004974	lincRNA gene	Chr1:178956385-178958899 (+)
FVB/NJ	MGP_FVBNJ_G0004995	lincRNA gene	Chr1:177060051-177062563 (+)
LP/J	MGP_LPJ_G0005052	lincRNA gene	Chr1:188983834-188986346 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004979	lincRNA gene	Chr1:208126748-208129260 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005171	lincRNA gene	Chr1:185269299-185271813 (+)
PWK/PhJ	MGP_PWKPhJ_G0004863	lincRNA gene	Chr1:178082067-178084581 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004788	lincRNA gene	Chr1:184239361-184241858 (+)
WSB/EiJ	MGP_WSBEiJ_G0004958	lincRNA gene	Chr1:185472408-185474921 (+)

Homology

• Gene Tree
  A430110L20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving A430110L20Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000054135 (Evidence)
• NCBI Gene
  329307

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054135	Ensembl Gene Model | MGI Sequence Detail	2513	C57BL/6J
transcript	ENSMUST00000181680	Ensembl | MGI Sequence Detail	2513	Not Applicable
polypeptide	Q8C9T2	UniProt | EBI | MGI Sequence Detail	175	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;