Gm1848 Pseudogene Detail

Summary

• Symbol
  Gm1848
• Name
  predicted gene 1848
• Synonyms
  LOC236737

• Feature Type
  pseudogene
• IDs
  MGI:3037706
  NCBI Gene: 236737
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:21013083-21013879 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 16.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037706	pseudogene	ChrX:21012921-21013883 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014347	pseudogene	ChrX:16056346-16057142 (+)
A/J	MGP_AJ_G0014357	pseudogene	ChrX:16148590-16153544 (+)
AKR/J	MGP_AKRJ_G0014283	pseudogene	ChrX:16703417-16704213 (+)
BALB/cJ	MGP_BALBcJ_G0014307	pseudogene	ChrX:15901849-15902645 (+)
C3H/HeJ	MGP_C3HHeJ_G0014142	pseudogene	ChrX:16269322-16270118 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014767	pseudogene	ChrX:16487326-16488122 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013782	pseudogene	ChrX:15416909-15417712 (-)
CBA/J	MGP_CBAJ_G0014126	pseudogene	ChrX:17226546-17227342 (+)
DBA/2J	MGP_DBA2J_G0014204	pseudogene	ChrX:15927273-15928069 (+)
FVB/NJ	MGP_FVBNJ_G0014205	pseudogene	ChrX:15834822-15835618 (+)
LP/J	MGP_LPJ_G0014298	pseudogene	ChrX:16321127-16321923 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014240	pseudogene	ChrX:17493050-17493846 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014738	pseudogene	ChrX:15983632-15984428 (+)
PWK/PhJ	MGP_PWKPhJ_G0013598	pseudogene	ChrX:15098282-15099045 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013847	pseudogene	ChrX:15831213-15832009 (+)

Homology

• Gene Tree
  Gm1848
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000083892 (Evidence)
• NCBI Gene
  236737

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083892	Ensembl Gene Model | MGI Sequence Detail	797	C57BL/6J
transcript	ENSMUST00000120711	Ensembl | MGI Sequence Detail	789	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:45876 Malik N, et al., Structural organization and chromosomal localization of the human Na,K-ATPase beta 3 subunit gene and pseudogene. Mamm Genome. 1998 Feb;9(2):136-43

TSS for Gm1848:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160701	ChrX:21012923-21012928 (+)	-157 bp