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Taf9b Gene Detail
Summary
  • Symbol
    Taf9b
  • Name
    TATA-box binding protein associated factor 9B
  • Synonyms
    Taf9l
  • Feature Type
    protein coding gene
  • IDs
    MGI:3039562
    NCBI Gene: 407786
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:105250489-105264764 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 47.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    364 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039562
 protein coding gene ChrX:105250480-105264764 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036005
 protein coding gene ChrX:102999058-103010581 (-)
A/J MGP_AJ_G0035984
 protein coding gene ChrX:102772881-102785425 (-)
AKR/J MGP_AKRJ_G0035903
 protein coding gene ChrX:106059033-106075655 (-)
BALB/cJ MGP_BALBcJ_G0035974
 protein coding gene ChrX:101608610-101622432 (-)
C3H/HeJ MGP_C3HHeJ_G0035681
 protein coding gene ChrX:103429399-103442344 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036501
 protein coding gene ChrX:105935980-105950112 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033329
 protein coding gene ChrX:100228219-100238638 (-)
CAST/EiJ MGP_CASTEiJ_G0034968
 protein coding gene ChrX:87577271-87591285 (-)
CBA/J MGP_CBAJ_G0035656
 protein coding gene ChrX:109255586-109269257 (-)
DBA/2J MGP_DBA2J_G0035810
 protein coding gene ChrX:102051431-102077264 (-)
FVB/NJ MGP_FVBNJ_G0035751
 protein coding gene ChrX:101369608-101380793 (-)
LP/J MGP_LPJ_G0035903
 protein coding gene ChrX:103966864-103978214 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035783
 protein coding gene ChrX:113953064-113967059 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036527
 protein coding gene ChrX:102629439-102643252 (-)
PWK/PhJ MGP_PWKPhJ_G0034664
 protein coding gene ChrX:85107014-85120892 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034493
 protein coding gene ChrX:88311051-88322484 (-)
WSB/EiJ MGP_WSBEiJ_G0035106
 protein coding gene ChrX:101337812-101353727 (-)



Homology
more
  • Human Ortholog
    TAF9B, TATA-box binding protein associated factor 9b
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TAF9B, TATA-box binding protein associated factor 9b
  • Synonyms
    DN-7, DN7, TAF9L, TAFII31L, TFIID-31
  • Links
    NCBI Gene ID: 51616
    neXtProt AC: NX_Q9HBM6
    UniProt: Q9HBM6

  • Chr Location
    Xq21.1; chrX:78129748-78139650 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 images
    9 phenotype references
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    815
  • Tissues
    103
  • cDNA Data
    31
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047242 Ensembl Gene Model | MGI Sequence Detail 14276 C57BL/6J ±  kb
transcript ENSMUST00000113495 Ensembl | MGI Sequence Detail 2512 Not Applicable  
polypeptide ENSMUSP00000109123 Ensembl | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000016037 transcription initiation factor TFIID subunit 9B
    (term hierarchy)
  • InterPro Domains
    IPR009072 Histone-fold
    IPR003162 Transcription initiation factor TAFII31
    IPR051431 Transcription initiation factor TFIID subunit 9
  • GlyGen
    Q6NZA9 2 sites, 1 O-linked glycan (2 sites)
Molecular
Reagents
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  • All nucleic 33
    cDNA 31
    Primer pair 2

    Microarray probesets 4
References
more
  • Summaries
    All 37
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory