BC048644 MGI Mouse Gene Detail - MGI:3039566

Sequence Map

Chr8:122634572-122643620 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3039566	lncRNA gene	Chr8:122634572-122646429 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004595	antisense lncRNA gene	Chr8:125427880-125440415 (+)
A/J	MGP_AJ_G0004575	antisense lncRNA gene	Chr8:120224213-120234267 (+)
AKR/J	MGP_AKRJ_G0004559	antisense lncRNA gene	Chr8:123751387-123761433 (+)
BALB/cJ	MGP_BALBcJ_G0004560	antisense lncRNA gene	Chr8:120430157-120440212 (+)
C3H/HeJ	MGP_C3HHeJ_G0004509	antisense lncRNA gene	Chr8:124443258-124453312 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004709	antisense lncRNA gene	Chr8:129610847-129621243 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004160	antisense lncRNA gene	Chr8:113058993-113061014 (+)
CAST/EiJ	MGP_CASTEiJ_G0004467	antisense lncRNA gene	Chr8:124495755-124509174 (+)
CBA/J	MGP_CBAJ_G0004503	antisense lncRNA gene	Chr8:134391139-134393130 (+)
DBA/2J	MGP_DBA2J_G0004518	antisense lncRNA gene	Chr8:119422023-119432390 (+)
FVB/NJ	MGP_FVBNJ_G0004535	antisense lncRNA gene	Chr8:118531805-118543566 (+)
LP/J	MGP_LPJ_G0004599	antisense lncRNA gene	Chr8:125552741-125563131 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004524	antisense lncRNA gene	Chr8:136591405-136603613 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004709	antisense lncRNA gene	Chr8:123919982-123930856 (+)
PWK/PhJ	MGP_PWKPhJ_G0004420	antisense lncRNA gene	Chr8:119226743-119237604 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004361	antisense lncRNA gene	Chr8:122629701-122640225 (+)
WSB/EiJ	MGP_WSBEiJ_G0004508	antisense lncRNA gene	Chr8:124671603-124683409 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	407789	NCBI Gene Model \| MGI Sequence Detail	9049	C57BL/6J	± kb
transcript	NR_167716	RefSeq \| MGI Sequence Detail	713	C57BL/6
polypeptide	Q3V0I3	UniProt \| EBI \| MGI Sequence Detail	230	Not Applicable

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UniProt

1 Sequence
InterPro Domains

IPR053359 Cysteine-rich Acidic Integral Membrane Protein

IPR016133 Insect cysteine-rich antifreeze protein

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Summaries

All 10
Earliest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for BC048644:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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