B130034C11Rik Gene Detail

Summary

• Symbol
  B130034C11Rik
• Name
  RIKEN cDNA B130034C11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041186
  NCBI Gene: 414095
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:87292961-87300926 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 49.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  417 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041186	lncRNA gene	Chr16:87292823-87309969 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015325	unclassified non-coding RNA gene	Chr16:88218357-88227169 (+)
A/J	MGP_AJ_G0015300	unclassified non-coding RNA gene	Chr16:84149340-84157320 (+)
AKR/J	MGP_AKRJ_G0015263	unclassified non-coding RNA gene	Chr16:86710067-86719116 (+)
BALB/cJ	MGP_BALBcJ_G0015263	unclassified non-coding RNA gene	Chr16:84674517-84682621 (+)
C3H/HeJ	MGP_C3HHeJ_G0015087	unclassified non-coding RNA gene	Chr16:87265712-87273759 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015717	unclassified non-coding RNA gene	Chr16:91079398-91087621 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013459	unclassified non-coding RNA gene	Chr16:82003665-82010891 (+)
CAST/EiJ	MGP_CASTEiJ_G0014638	unclassified non-coding RNA gene	Chr16:87645553-87654714 (+)
CBA/J	MGP_CBAJ_G0015066	unclassified non-coding RNA gene	Chr16:94984837-94998580 (+)
DBA/2J	MGP_DBA2J_G0015161	unclassified non-coding RNA gene	Chr16:84071137-84079097 (+)
FVB/NJ	MGP_FVBNJ_G0015168	unclassified non-coding RNA gene	Chr16:83180218-83188133 (+)
LP/J	MGP_LPJ_G0015241	unclassified non-coding RNA gene	Chr16:87901691-87910968 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015194	unclassified non-coding RNA gene	Chr16:99537777-99550382 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015757	unclassified non-coding RNA gene	Chr16:87179446-87189244 (+)
PWK/PhJ	MGP_PWKPhJ_G0014428	unclassified non-coding RNA gene	Chr16:84185051-84193729 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014216	unclassified non-coding RNA gene	Chr16:86702665-86712094 (+)
WSB/EiJ	MGP_WSBEiJ_G0014745	unclassified non-coding RNA gene	Chr16:87413280-87423476 (+)

Homology

• Gene Tree
  B130034C11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  33
• Gene trapped
  30
• Targeted
  2
• Genomic Mutations
  3 involving B130034C11Rik
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000093606 (Evidence)
• NCBI Gene
  414095

Representative Sequences			Length	Strain/Species
genomic	414095	NCBI Gene Model | MGI Sequence Detail	7966	C57BL/6J
transcript	NR_040375	RefSeq | MGI Sequence Detail	1406	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

References

• Summaries
  All 18

  Phenotypes 10
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for B130034C11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139221	Chr16:87292871-87292950 (+)	-50 bp