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C130026L21Rik Gene Detail
Summary
  • Symbol
    C130026L21Rik
  • Name
    RIKEN cDNA C130026L21 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3041189
    NCBI Gene: 330164
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr5:111729427-111735019 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 54.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    219 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3041189
 lncRNA gene Chr5:111729288-111752798 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006751
 lincRNA gene Chr5:114096449-114122952 (+)
A/J MGP_AJ_G0006745
 lincRNA gene Chr5:109671650-109695227 (+)
AKR/J MGP_AKRJ_G0006715
 lincRNA gene Chr5:113153271-113182265 (+)
BALB/cJ MGP_BALBcJ_G0006721
 lincRNA gene Chr5:111040439-111063897 (+)
C3H/HeJ MGP_C3HHeJ_G0006666
 lincRNA gene Chr5:113577014-113601193 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006886
 lincRNA gene Chr5:118570018-118602462 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006142
 lincRNA gene Chr5:104509474-104532897 (+)
CAST/EiJ MGP_CASTEiJ_G0006589
 lincRNA gene Chr5:112476120-112502563 (+)
CBA/J MGP_CBAJ_G0006648
 lincRNA gene Chr5:123008276-123039866 (+)
DBA/2J MGP_DBA2J_G0006668
 lincRNA gene Chr5:109748314-109772815 (+)
FVB/NJ MGP_FVBNJ_G0006692
 lincRNA gene Chr5:108447470-108472329 (+)
LP/J MGP_LPJ_G0006752
 lincRNA gene Chr5:114665395-114690663 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006676
 lincRNA gene Chr5:127622207-127650557 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006888
 lincRNA gene Chr5:112588662-112614858 (+)
PWK/PhJ MGP_PWKPhJ_G0006528
 lincRNA gene Chr5:108339554-108363827 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006434
 lincRNA gene Chr5:110059816-110083788 (+)
WSB/EiJ MGP_WSBEiJ_G0006640
 lincRNA gene Chr5:113083328-113110088 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving C130026L21Rik
  • Find Mice (IMSR)
    3 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    709
  • Tissues
    3
  • cDNA Data
    7
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    33
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 330164 NCBI Gene Model | MGI Sequence Detail 5593 C57BL/6J ±  kb
transcript NR_015546 RefSeq | MGI Sequence Detail 1838 C57BL/6  
polypeptide Q8C897 UniProt | EBI | MGI Sequence Detail 110 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory