E130317F20Rik Gene Detail

Summary

• Symbol
  E130317F20Rik
• Name
  RIKEN cDNA E130317F20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041202
  NCBI Gene: 414101
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:79687215-79690805 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041202	lncRNA gene	Chr10:79687211-79690805 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015138	unclassified non-coding RNA gene	Chr10:80407619-80411194 (-)
A/J	MGP_AJ_G0015112	unclassified non-coding RNA gene	Chr10:77605890-77609465 (-)
AKR/J	MGP_AKRJ_G0015075	unclassified non-coding RNA gene	Chr10:79719142-79722717 (-)
BALB/cJ	MGP_BALBcJ_G0015075	unclassified non-coding RNA gene	Chr10:77831973-77835548 (-)
C3H/HeJ	MGP_C3HHeJ_G0014898	unclassified non-coding RNA gene	Chr10:79823410-79826985 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015531	unclassified non-coding RNA gene	Chr10:83181565-83185140 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013277	unclassified non-coding RNA gene	Chr10:73831449-73835126 (-)
CAST/EiJ	MGP_CASTEiJ_G0014452	unclassified non-coding RNA gene	Chr10:80009023-80012644 (-)
CBA/J	MGP_CBAJ_G0014877	unclassified non-coding RNA gene	Chr10:86407902-86411477 (-)
DBA/2J	MGP_DBA2J_G0014970	unclassified non-coding RNA gene	Chr10:76820775-76824350 (-)
FVB/NJ	MGP_FVBNJ_G0014981	unclassified non-coding RNA gene	Chr10:75999202-76002777 (-)
LP/J	MGP_LPJ_G0015052	unclassified non-coding RNA gene	Chr10:80884052-80887627 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015008	unclassified non-coding RNA gene	Chr10:88380671-88384246 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015570	unclassified non-coding RNA gene	Chr10:79703059-79706634 (-)
PWK/PhJ	MGP_PWKPhJ_G0014244	unclassified non-coding RNA gene	Chr10:76682621-76686251 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014032	unclassified non-coding RNA gene	Chr10:78678885-78682480 (-)
WSB/EiJ	MGP_WSBEiJ_G0014555	unclassified non-coding RNA gene	Chr10:79726649-79730225 (-)

Homology

• Gene Tree
  E130317F20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  35
• Chemically induced (other)
  1
• Gene trapped
  34
• Genomic Mutations
  1 involving E130317F20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000091994 (Evidence)
• NCBI Gene
  414101

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091994	Ensembl Gene Model | MGI Sequence Detail	3591	C57BL/6J
transcript	ENSMUST00000217802	Ensembl | MGI Sequence Detail	3420	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 23

  Phenotypes 12
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for E130317F20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98356	Chr10:79690119-79690151 (-)	670 bp
Tssr98355	Chr10:79688291-79688305 (-)	2,507 bp