E230016K23Rik Gene Detail

Summary

• Symbol
  E230016K23Rik
• Name
  RIKEN cDNA E230016K23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041204
  NCBI Gene: 100504464
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:83472887-83514519 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 50.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1389 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041204	lncRNA gene	Chr11:83472882-83514519 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015191	unclassified non-coding RNA gene	Chr11:84923562-84982865 (+)
A/J	MGP_AJ_G0015165	unclassified non-coding RNA gene	Chr11:81692603-81736271 (+)
AKR/J	MGP_AKRJ_G0015128	unclassified non-coding RNA gene	Chr11:84130321-84174506 (+)
BALB/cJ	MGP_BALBcJ_G0015127	unclassified non-coding RNA gene	Chr11:82110061-82153254 (+)
C3H/HeJ	MGP_C3HHeJ_G0014951	unclassified non-coding RNA gene	Chr11:84186713-84233976 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015584	unclassified non-coding RNA gene	Chr11:87527395-87572687 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013327	unclassified non-coding RNA gene	Chr11:78813259-78853640 (+)
CAST/EiJ	MGP_CASTEiJ_G0014504	unclassified non-coding RNA gene	Chr11:84761818-84813608 (+)
CBA/J	MGP_CBAJ_G0014930	unclassified non-coding RNA gene	Chr11:91283673-91333070 (+)
DBA/2J	MGP_DBA2J_G0015023	unclassified non-coding RNA gene	Chr11:81292630-81334568 (+)
FVB/NJ	MGP_FVBNJ_G0015035	unclassified non-coding RNA gene	Chr11:80776157-80821356 (+)
LP/J	MGP_LPJ_G0015104	unclassified non-coding RNA gene	Chr11:85474258-85525227 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015061	unclassified non-coding RNA gene	Chr11:91462509-91507057 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015623	unclassified non-coding RNA gene	Chr11:84399188-84454332 (+)
PWK/PhJ	MGP_PWKPhJ_G0014296	unclassified non-coding RNA gene	Chr11:82050651-82093310 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014083	unclassified non-coding RNA gene	Chr11:83937652-83977718 (+)
WSB/EiJ	MGP_WSBEiJ_G0014607	unclassified non-coding RNA gene	Chr11:84261480-84305296 (+)

Homology

• Gene Tree
  E230016K23Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  1
• Targeted
  1
• Transgenic
  4
• Genomic Mutations
  3 involving E230016K23Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000051832 (Evidence)
• NCBI Gene
  100504464

Representative Sequences			Length	Strain/Species
genomic	100504464	NCBI Gene Model | MGI Sequence Detail	41633	C57BL/6J
transcript	NR_036452	RefSeq | MGI Sequence Detail	2221	C57BL/6
polypeptide	Q8C6Q1	UniProt | EBI | MGI Sequence Detail	169	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 32

  Diseases 1

  Phenotypes 17
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:358278 Yang Y, et al., Erythrocytic alpha-Synuclein and the Gut Microbiome: Kindling of the Gut-Brain Axis in Parkinson's Disease. Mov Disord. 2024 Jan;39(1):40-52

TSS for E230016K23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103717	Chr11:83472899-83472916 (+)	21 bp
Tssr103718	Chr11:83479213-83479228 (+)	6,334 bp
Tssr3610	Chr11:83494528-83494558 (+)	21,656 bp
Tssr3612	Chr11:83495792-83495802 (+)	22,910 bp