A430072P03Rik Gene Detail

Summary

• Symbol
  A430072P03Rik
• Name
  RIKEN cDNA A430072P03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041214
  NCBI Gene: 414110
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:107873023-107876671 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 52.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041214	lncRNA gene	Chr5:107873023-107876671 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015609	unclassified non-coding RNA gene	Chr5:109773017-109776626 (+)
A/J	MGP_AJ_G0015585	unclassified non-coding RNA gene	Chr5:105560231-105563875 (+)
AKR/J	MGP_AKRJ_G0015549	unclassified non-coding RNA gene	Chr5:108970307-108973945 (+)
BALB/cJ	MGP_BALBcJ_G0015547	unclassified non-coding RNA gene	Chr5:106693417-106697061 (+)
C3H/HeJ	MGP_C3HHeJ_G0015369	unclassified non-coding RNA gene	Chr5:109413808-109417441 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016001	unclassified non-coding RNA gene	Chr5:114262905-114266539 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013736	unclassified non-coding RNA gene	Chr5:100621849-100625481 (+)
CAST/EiJ	MGP_CASTEiJ_G0014925	unclassified non-coding RNA gene	Chr5:108354334-108358680 (+)
CBA/J	MGP_CBAJ_G0015350	unclassified non-coding RNA gene	Chr5:118115233-118118868 (+)
DBA/2J	MGP_DBA2J_G0015444	unclassified non-coding RNA gene	Chr5:105696215-105699822 (+)
FVB/NJ	MGP_FVBNJ_G0015451	unclassified non-coding RNA gene	Chr5:104425981-104429624 (+)
LP/J	MGP_LPJ_G0015525	unclassified non-coding RNA gene	Chr5:110360120-110363725 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015474	unclassified non-coding RNA gene	Chr5:123012483-123017172 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016043	unclassified non-coding RNA gene	Chr5:108531585-108535189 (+)
PWK/PhJ	MGP_PWKPhJ_G0014710	unclassified non-coding RNA gene	Chr5:104503193-104506839 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014498	unclassified non-coding RNA gene	Chr5:106044798-106048410 (+)
WSB/EiJ	MGP_WSBEiJ_G0015029	unclassified non-coding RNA gene	Chr5:108827752-108831386 (+)

Homology

• Gene Tree
  A430072P03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving A430072P03Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000090030 (Evidence)
• NCBI Gene
  414110

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090030	Ensembl Gene Model | MGI Sequence Detail	3649	C57BL/6J
transcript	ENSMUST00000161480	Ensembl | MGI Sequence Detail	1510	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for A430072P03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47781	Chr5:107872062-107872079 (+)	-952 bp
Tssr47782	Chr5:107873025-107873035 (+)	7 bp
Tssr47783	Chr5:107873799-107873806 (+)	780 bp
Tssr47784	Chr5:107873923-107873933 (+)	905 bp
Tssr47785	Chr5:107874007-107874033 (+)	997 bp
Tssr47786	Chr5:107874740-107874746 (+)	1,720 bp