A230052G05Rik Gene Detail

Summary

• Symbol
  A230052G05Rik
• Name
  RIKEN cDNA A230052G05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045239
  NCBI Gene: 442796
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:71315771-71318072 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 34.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045239	lncRNA gene	Chr8:71315771-71318072 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033731	protein coding gene	Chr8:71175254-71177553 (+)
A/J	MGP_AJ_G0033714	protein coding gene	Chr8:68268317-68270618 (+)
AKR/J	MGP_AKRJ_G0033639	protein coding gene	Chr8:70228920-70231219 (+)
BALB/cJ	MGP_BALBcJ_G0033710	protein coding gene	Chr8:68503037-68505336 (+)
C3H/HeJ	MGP_C3HHeJ_G0033420	protein coding gene	Chr8:70873145-70875444 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034227	protein coding gene	Chr8:73852254-73854555 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0032745	protein coding gene	Chr8:70350150-70352448 (+)
CBA/J	MGP_CBAJ_G0033398	protein coding gene	Chr8:76512460-76514759 (+)
DBA/2J	MGP_DBA2J_G0033552	protein coding gene	Chr8:67988237-67990536 (+)
FVB/NJ	MGP_FVBNJ_G0033493	protein coding gene	Chr8:67127016-67129315 (+)
LP/J	MGP_LPJ_G0033639	protein coding gene	Chr8:71188751-71191050 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033536	protein coding gene	Chr8:79144685-79146986 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034245	protein coding gene	Chr8:70408585-70410884 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0032289	protein coding gene	Chr8:69383359-69385649 (+)
WSB/EiJ	MGP_WSBEiJ_G0032860	protein coding gene	Chr8:70772969-70775268 (+)

Homology

• Gene Tree
  A230052G05Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• UniProt
  1

• Ensembl
  ENSMUSG00000020887 (Evidence)
• NCBI Gene
  442796

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000020887	Ensembl Gene Model | MGI Sequence Detail	2302	C57BL/6J
transcript	AK079546	GenBank | ENA | DDBJ | MGI Sequence Detail	2303	C57BL/6J
polypeptide	Q8C546	UniProt | EBI | MGI Sequence Detail	178	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;