9330154J02Rik Gene Detail

Summary

• Symbol
  9330154J02Rik
• Name
  RIKEN cDNA 9330154J02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045244
  NCBI Gene: 442799
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:85702354-85725733 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 46.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  855 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045244	lncRNA gene	Chr9:85702294-85726376 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015750	unclassified non-coding RNA gene	Chr9:86617079-86641039 (-)
A/J	MGP_AJ_G0015727	unclassified non-coding RNA gene	Chr9:83593187-83617783 (-)
AKR/J	MGP_AKRJ_G0015691	unclassified non-coding RNA gene	Chr9:85576552-85604993 (-)
BALB/cJ	MGP_BALBcJ_G0015688	unclassified non-coding RNA gene	Chr9:83241356-83265948 (-)
C3H/HeJ	MGP_C3HHeJ_G0015510	unclassified non-coding RNA gene	Chr9:86058348-86083138 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016144	unclassified non-coding RNA gene	Chr9:88966886-88990964 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013870	unclassified non-coding RNA gene	Chr9:82410626-82435263 (-)
CAST/EiJ	MGP_CASTEiJ_G0015065	unclassified non-coding RNA gene	Chr9:86530954-86556073 (-)
CBA/J	MGP_CBAJ_G0015490	unclassified non-coding RNA gene	Chr9:92164743-92188847 (-)
DBA/2J	MGP_DBA2J_G0015588	unclassified non-coding RNA gene	Chr9:83164615-83188930 (-)
FVB/NJ	MGP_FVBNJ_G0015593	unclassified non-coding RNA gene	Chr9:82285446-82311878 (-)
LP/J	MGP_LPJ_G0015668	unclassified non-coding RNA gene	Chr9:86824851-86848950 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015616	unclassified non-coding RNA gene	Chr9:93719294-93743444 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016186	unclassified non-coding RNA gene	Chr9:85702524-85727776 (-)
PWK/PhJ	MGP_PWKPhJ_G0014846	unclassified non-coding RNA gene	Chr9:83352984-83377245 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014634	unclassified non-coding RNA gene	Chr9:85911217-85935568 (-)
WSB/EiJ	MGP_WSBEiJ_G0015169	unclassified non-coding RNA gene	Chr9:85733240-85761026 (-)

Homology

• Gene Tree
  9330154J02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9330154J02Rik
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  8
• UniProt
  2

• Ensembl
  ENSMUSG00000056031 (Evidence)
• NCBI Gene
  442799

Representative Sequences			Length	Strain/Species
genomic	442799	NCBI Gene Model | MGI Sequence Detail	23380	C57BL/6J
transcript	AK034076	GenBank | ENA | DDBJ | MGI Sequence Detail	2557	C57BL/6J
polypeptide	Q8BXZ2	UniProt | EBI | MGI Sequence Detail	196	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563