D130007C19Rik Gene Detail

Summary

• Symbol
  D130007C19Rik
• Name
  RIKEN cDNA D130007C19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045257
  NCBI Gene: 442805
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:123785865-123811062 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  519 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045257	lncRNA gene	Chr4:123785865-123811062 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036449	pseudogene	Chr4:125387875-125389388 (-)
A/J	MGP_AJ_G0036434	pseudogene	Chr4:120468869-120470367 (-)
AKR/J	MGP_AKRJ_G0036385	pseudogene	Chr4:123773536-123775042 (-)
BALB/cJ	MGP_BALBcJ_G0036426	pseudogene	Chr4:121067596-121069456 (-)
C3H/HeJ	MGP_C3HHeJ_G0036117	pseudogene	Chr4:123873051-123874547 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036938	pseudogene	Chr4:130223769-130225228 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034045	pseudogene	Chr4:113671694-113673173 (-)
CAST/EiJ	MGP_CASTEiJ_G0035313	pseudogene	Chr4:121884171-121885692 (-)
CBA/J	MGP_CBAJ_G0036089	pseudogene	Chr4:133520171-133521670 (-)
DBA/2J	MGP_DBA2J_G0036265	pseudogene	Chr4:120973113-120974898 (-)
FVB/NJ	MGP_FVBNJ_G0036220	pseudogene	Chr4:119587204-119588634 (-)
LP/J	MGP_LPJ_G0036317	pseudogene	Chr4:125684679-125686188 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036221	pseudogene	Chr4:138486025-138487516 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037047	pseudogene	Chr4:124132975-124134475 (-)
PWK/PhJ	MGP_PWKPhJ_G0035010	pseudogene	Chr4:117362571-117364133 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0034827	pseudogene	Chr4:119895016-119896583 (-)
WSB/EiJ	MGP_WSBEiJ_G0035506	pseudogene	Chr4:124203420-124204944 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  3 involving D130007C19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  4
• UniProt
  2

• NCBI Gene
  442805

Representative Sequences			Length	Strain/Species
genomic	442805	NCBI Gene Model | MGI Sequence Detail	25198	C57BL/6J
transcript	AK132422	GenBank | ENA | DDBJ | MGI Sequence Detail	2442	C57BL/6J
polypeptide	Q8BQA5	UniProt | EBI | MGI Sequence Detail	180	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D130007C19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43309	Chr4:123811019-123811111 (-)	-3 bp
Tssr43308	Chr4:123801233-123801237 (-)	9,827 bp
Tssr43304	Chr4:123786596-123786600 (-)	24,464 bp