A230083G16Rik Gene Detail

Summary

• Symbol
  A230083G16Rik
• Name
  RIKEN cDNA A230083G16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045289
  NCBI Gene: 442825
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:124893826-124902807 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 59.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045289	lncRNA gene	Chr6:124893826-124902807 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004356	antisense lncRNA gene	Chr6:128232181-128241174 (+)
A/J	MGP_AJ_G0004333	antisense lncRNA gene	Chr6:123402766-123412522 (+)
AKR/J	MGP_AKRJ_G0004315	antisense lncRNA gene	Chr6:126771039-126780016 (+)
BALB/cJ	MGP_BALBcJ_G0004319	antisense lncRNA gene	Chr6:123003498-123012470 (+)
C3H/HeJ	MGP_C3HHeJ_G0004268	antisense lncRNA gene	Chr6:126820222-126830458 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004469	antisense lncRNA gene	Chr6:131612038-131624759 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003931	antisense lncRNA gene	Chr6:120614589-120622538 (+)
CAST/EiJ	MGP_CASTEiJ_G0004229	antisense lncRNA gene	Chr6:127033185-127042008 (+)
CBA/J	MGP_CBAJ_G0004262	antisense lncRNA gene	Chr6:136647065-136657654 (+)
DBA/2J	MGP_DBA2J_G0004277	antisense lncRNA gene	Chr6:122332233-122341841 (+)
FVB/NJ	MGP_FVBNJ_G0004294	antisense lncRNA gene	Chr6:121233993-121244746 (+)
LP/J	MGP_LPJ_G0004356	antisense lncRNA gene	Chr6:128401413-128411714 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004285	antisense lncRNA gene	Chr6:140698692-140707647 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004466	antisense lncRNA gene	Chr6:126661914-126673978 (+)
PWK/PhJ	MGP_PWKPhJ_G0004182	antisense lncRNA gene	Chr6:120563392-120573056 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004124	antisense lncRNA gene	Chr6:124748927-124757620 (+)
WSB/EiJ	MGP_WSBEiJ_G0004267	antisense lncRNA gene	Chr6:127027231-127039918 (+)

Homology

• Gene Tree
  A230083G16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  32
• Gene trapped
  31
• Targeted
  1
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055818 (Evidence)
• NCBI Gene
  442825

Representative Sequences			Length	Strain/Species
genomic	442825	NCBI Gene Model | MGI Sequence Detail	8982	C57BL/6J
transcript	NR_152158	RefSeq | MGI Sequence Detail	991	C57BL/6
polypeptide	Q8CAE1	UniProt | EBI | MGI Sequence Detail	153	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for A230083G16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58864	Chr6:124891867-124891891 (+)	-1,947 bp