Mgat4f MGI Mouse Gene Detail - MGI:3045320

Symbol

Mgat4f
Name

MGAT4 family, member F
Synonyms

4933406M09Rik

Feature Type

protein coding gene
IDs

MGI:3045320
NCBI Gene: 240755
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr1:134313678-134318719 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 58.21 cM
Mapping Data

1 experiment

SNPs within 2kb

190 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045320	protein coding gene	Chr1:134313669-134319240 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016505	protein coding gene	Chr1:138043263-138048300 (+)
A/J	MGP_AJ_G0016488	protein coding gene	Chr1:132849823-132854864 (+)
AKR/J	MGP_AKRJ_G0016453	protein coding gene	Chr1:136810714-136815763 (+)
BALB/cJ	MGP_BALBcJ_G0016448	protein coding gene	Chr1:133184386-133189427 (+)
C3H/HeJ	MGP_C3HHeJ_G0016274	protein coding gene	Chr1:136914186-136919223 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016909	protein coding gene	Chr1:143077023-143082064 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014620	protein coding gene	Chr1:125987262-125992698 (+)
CAST/EiJ	MGP_CASTEiJ_G0015854	protein coding gene	Chr1:135965495-135970603 (+)
CBA/J	MGP_CBAJ_G0016247	protein coding gene	Chr1:148040523-148045552 (+)
DBA/2J	MGP_DBA2J_G0016353	protein coding gene	Chr1:131860566-131865619 (+)
FVB/NJ	MGP_FVBNJ_G0016352	protein coding gene	Chr1:130490464-130495525 (+)
LP/J	MGP_LPJ_G0016424	protein coding gene	Chr1:139324903-139329944 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016377	protein coding gene	Chr1:153724500-153729529 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016945	protein coding gene	Chr1:136544468-136549505 (+)
PWK/PhJ	MGP_PWKPhJ_G0015640	protein coding gene	Chr1:130882175-130889540 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015427	protein coding gene	Chr1:135516896-135521875 (+)
WSB/EiJ	MGP_WSBEiJ_G0015917	protein coding gene	Chr1:136578647-136583696 (+)

Human Ortholog

MGAT4FP, MGAT4 family member F, pseudogene

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

MGAT4FP, MGAT4 family member F, pseudogene
Links

HGNC:49419

NCBI Gene ID: 100506747
Chr Location

chr1:202986452-203007265 (-) GRCh38

MGI Vertebrate Homology

Mgat4f stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: MGAT4FP
Gene Tree

Mgat4f

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Phenotype Summary

12 phenotype references

All Mutations and Alleles

9
Chemically induced (other)

2
Gene trapped

1
Radiation induced

1
Targeted

5
Genomic Mutations

3 involving Mgat4f
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

29 strains or lines available

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All GO Annotations

2
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

708
Tissues

2
cDNA Data

5
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

35
RefSeq

6
UniProt

2
CCDS

CCDS15307.2

Ensembl

ENSMUSG00000050526 (Evidence)
NCBI Gene

240755

			Length	Strain/Species	Flank
genomic	ENSMUSG00000050526	Ensembl Gene Model \| MGI Sequence Detail	5042	C57BL/6J	± kb
transcript	ENSMUST00000162187	Ensembl \| MGI Sequence Detail	1768	Not Applicable
polypeptide	ENSMUSP00000124251	Ensembl \| MGI Sequence Detail	479	Not Applicable

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UniProt

2 Sequences
InterPro Domains

IPR006759 Glycosyl transferase family 54

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All nucleic 5

cDNA 5

Microarray probesets 1

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MGI:6357164

Summaries

All 26

Developmental Gene Expression 1

Gene Ontology 1

Phenotypes 12
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Mgat4f:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8874	Chr1:134313676-134313681 (+)	1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 10/29/2024 MGI 6.24