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6820408C15Rik Gene Detail
Summary
  • Symbol
    6820408C15Rik
  • Name
    RIKEN cDNA 6820408C15 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045333
    NCBI Gene: 228778
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:152257507-152286250 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 74.99 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    723 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045333
 protein coding gene Chr2:152257507-152286256 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026660
 protein coding gene Chr2:156955905-157002010 (+)
A/J MGP_AJ_G0026626
 protein coding gene Chr2:150701660-150730001 (+)
AKR/J MGP_AKRJ_G0026596
 protein coding gene Chr2:155100055-155132863 (+)
BALB/cJ MGP_BALBcJ_G0026635
 protein coding gene Chr2:151011306-151040441 (+)
C3H/HeJ MGP_C3HHeJ_G0026378
 protein coding gene Chr2:155483847-155513752 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027084
 protein coding gene Chr2:161540157-161572930 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024455
 protein coding gene Chr2:144290756-144319292 (+)
CAST/EiJ MGP_CASTEiJ_G0025839
 protein coding gene Chr2:155717281-155747653 (+)
CBA/J MGP_CBAJ_G0026356
 protein coding gene Chr2:167449611-167480257 (+)
DBA/2J MGP_DBA2J_G0026492
 protein coding gene Chr2:149917668-149948030 (+)
FVB/NJ MGP_FVBNJ_G0026458
 protein coding gene Chr2:148361111-148393960 (+)
LP/J MGP_LPJ_G0026596
 protein coding gene Chr2:157115125-157146812 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026479
 protein coding gene Chr2:171558488-171589966 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027140
 protein coding gene Chr2:154985782-155016105 (+)
PWK/PhJ MGP_PWKPhJ_G0025573
 protein coding gene Chr2:149434311-149464079 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025376
 protein coding gene Chr2:153809022-153841182 (+)
WSB/EiJ MGP_WSBEiJ_G0025909
 protein coding gene Chr2:155906892-155935894 (+)



Homology
more
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
  • Synonyms
    dJ1103G7.2
  • Links
    NCBI Gene ID: 140680
    neXtProt AC: NX_Q9NUD7
    UniProt: Q9NUD7

  • Chr Location
    20p13; chr20:270863-290778 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000032680 Ensembl Gene Model | MGI Sequence Detail 28744 C57BL/6J ±  kb
    transcript ENSMUST00000039961 Ensembl | MGI Sequence Detail 1684 Not Applicable  
    polypeptide ENSMUSP00000037024 Ensembl | MGI Sequence Detail 354 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • InterPro Domains
      IPR029236 Protein of unknown function DUF4618
    • GlyGen
      Q8BJX2 1 site, 1 N-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 8
      cDNA 8

      Microarray probesets 4
    References
    more
    • Summaries
      All 25
      Phenotypes 9
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory