Ftdc2 Gene Detail

Summary

• Symbol
  Ftdc2
• Name
  ferritin domain containing 2
• Synonyms
  E330017A01Rik, Ftdc

• Feature Type
  protein coding gene
• IDs
  MGI:3045360
  NCBI Gene: 224247
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:58455625-58458766 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 34.75 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045360	protein coding gene	Chr16:58455530-58459102 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022904	protein coding gene	Chr16:57819159-57822731 (-)
A/J	MGP_AJ_G0022871	protein coding gene	Chr16:55350977-55354549 (-)
AKR/J	MGP_AKRJ_G0022843	protein coding gene	Chr16:57080392-57083964 (-)
BALB/cJ	MGP_BALBcJ_G0022871	protein coding gene	Chr16:55446812-55450384 (-)
C3H/HeJ	MGP_C3HHeJ_G0022634	protein coding gene	Chr16:57298284-57301856 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023319	protein coding gene	Chr16:59430438-59434010 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020830	protein coding gene	Chr16:54893887-54897434 (-)
CAST/EiJ	MGP_CASTEiJ_G0022161	protein coding gene	Chr16:57632078-57635651 (-)
CBA/J	MGP_CBAJ_G0022607	protein coding gene	Chr16:61806247-61809820 (-)
DBA/2J	MGP_DBA2J_G0022739	protein coding gene	Chr16:55077746-55081318 (-)
FVB/NJ	MGP_FVBNJ_G0022714	protein coding gene	Chr16:54833018-54836590 (-)
LP/J	MGP_LPJ_G0022806	protein coding gene	Chr16:57617496-57621068 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022732	protein coding gene	Chr16:62180640-62184212 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023334	protein coding gene	Chr16:57211934-57215506 (-)
PWK/PhJ	MGP_PWKPhJ_G0021900	protein coding gene	Chr16:55377969-55381542 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021730	protein coding gene	Chr16:56978960-56982341 (-)
WSB/EiJ	MGP_WSBEiJ_G0022205	protein coding gene	Chr16:57247698-57251270 (-)

Homology

• MGI Vertebrate Homology
  Ftdc2 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Ftdc2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  5
• Endonuclease-mediated
  1
• Targeted
  4
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  13 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  1

Expression

• Assay Results
  744
• Tissues
  31
• cDNA Data
  14
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS28232.1

• Ensembl
  ENSMUSG00000055789 (Evidence)
• NCBI Gene
  224247

Representative Sequences			Length	Strain/Species
genomic	224247	NCBI Gene Model | MGI Sequence Detail	3142	C57BL/6J
transcript	NM_175011	RefSeq | MGI Sequence Detail	677	C57BL/6
polypeptide	NP_778176	RefSeq | MGI Sequence Detail	192	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR001519 Ferritin
  IPR008331 Ferritin/DPS protein domain
  IPR012347 Ferritin-like
  IPR009040 Ferritin-like diiron domain
  IPR009078 Ferritin-like superfamily

Molecular
Reagents

• All nucleic 18

  cDNA 14

  Primer pair 3

  Other 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:6358474, MGI:6361904

References

• Summaries
  All 21

  Developmental Gene Expression 3

  Gene Ontology 1

  Phenotypes 3
• Earliest
  J:114755 Grant GR, et al., Multiple polymorphic loci determine basal hepatic and splenic iron status in mice. Hepatology. 2006 Jul;44(1):174-85
• Latest
  J:342865 Wan Y, et al., LSM14B is essential for oocyte meiotic maturation by regulating maternal mRNA storage and clearance. Nucleic Acids Res. 2023 Nov 27;51(21):11652-11667

TSS for Ftdc2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141638	Chr16:58458754-58458773 (-)	2 bp