9230106D20Rik Gene Detail

Summary

• Symbol
  9230106D20Rik
• Name
  RIKEN cDNA 9230106D20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045371
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:19520498-19536549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 8.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  523 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045371	lncRNA gene	Chr10:19520498-19536549 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017047	protein coding gene	Chr10:17370722-17389088 (+)
A/J	MGP_AJ_G0017025	protein coding gene	Chr10:16714095-16733488 (+)
AKR/J	MGP_AKRJ_G0016989	protein coding gene	Chr10:16988709-17008613 (+)
BALB/cJ	MGP_BALBcJ_G0016983	protein coding gene	Chr10:16768678-16788783 (+)
C3H/HeJ	MGP_C3HHeJ_G0016808	protein coding gene	Chr10:17309818-17326939 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017445	protein coding gene	Chr10:17790653-17806451 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015150	protein coding gene	Chr10:15720162-15737792 (+)
CAST/EiJ	MGP_CASTEiJ_G0016390	protein coding gene	Chr10:17189602-17207825 (+)
CBA/J	MGP_CBAJ_G0016780	protein coding gene	Chr10:18607099-18627207 (+)
DBA/2J	MGP_DBA2J_G0016888	protein coding gene	Chr10:16592946-16609466 (+)
FVB/NJ	MGP_FVBNJ_G0016883	protein coding gene	Chr10:16349821-16366222 (+)
LP/J	MGP_LPJ_G0016963	protein coding gene	Chr10:17175749-17196650 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016913	protein coding gene	Chr10:18855862-18873828 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017483	protein coding gene	Chr10:16974653-16993005 (+)
PWK/PhJ	MGP_PWKPhJ_G0016175	protein coding gene	Chr10:16464493-16481003 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015958	protein coding gene	Chr10:17138255-17154489 (+)
WSB/EiJ	MGP_WSBEiJ_G0016452	protein coding gene	Chr10:17070688-17088886 (+)

Homology

• Gene Tree
  9230106D20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9230106D20Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000042940 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000042940	Ensembl Gene Model | MGI Sequence Detail	16052	C57BL/6J
transcript	ENSMUST00000216922	Ensembl | MGI Sequence Detail	1407	Not Applicable
polypeptide	Q8CC72	UniProt | EBI | MGI Sequence Detail	171	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for 9230106D20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3149	Chr10:19520738-19520742 (+)	242 bp