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Platr7 Gene Detail
Summary
  • Symbol
    Platr7
  • Name
    pluripotency associated transcript 7
  • Synonyms
    C330046G13Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3045387
    NCBI Gene: 442847
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:84383281-84389202 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 41.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    259 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045387
 lncRNA gene Chr10:84382208-84390241 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005138
 lincRNA gene Chr10:85420231-85426215 (-)
A/J MGP_AJ_G0005121
 lincRNA gene Chr10:82520407-82526357 (-)
AKR/J MGP_AKRJ_G0005099
 lincRNA gene Chr10:84811205-84819264 (-)
BALB/cJ MGP_BALBcJ_G0005102
 lincRNA gene Chr10:82769796-82775697 (-)
C3H/HeJ MGP_C3HHeJ_G0005051
 lincRNA gene Chr10:84895427-84902604 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005252
 lincRNA gene Chr10:88311754-88317694 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004658
 lincRNA gene Chr10:78344802-78350600 (-)
CAST/EiJ MGP_CASTEiJ_G0004998
 lincRNA gene Chr10:84747312-84753957 (-)
CBA/J MGP_CBAJ_G0005041
 lincRNA gene Chr10:92017653-92026430 (-)
DBA/2J MGP_DBA2J_G0005060
 lincRNA gene Chr10:81663445-81669602 (-)
FVB/NJ MGP_FVBNJ_G0005082
 lincRNA gene Chr10:80895874-80902722 (-)
LP/J MGP_LPJ_G0005139
 lincRNA gene Chr10:86057413-86063313 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005065
 lincRNA gene Chr10:93616356-93623454 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005259
 lincRNA gene Chr10:84736527-84742431 (-)
PWK/PhJ MGP_PWKPhJ_G0004949
 lincRNA gene Chr10:81522937-81528993 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004874
 lincRNA gene Chr10:83361102-83366915 (-)
WSB/EiJ MGP_WSBEiJ_G0005045
 lincRNA gene Chr10:84725932-84731836 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 442847 NCBI Gene Model | MGI Sequence Detail 5922 C57BL/6J ±  kb
transcript NR_040658 RefSeq | MGI Sequence Detail 1334 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 17
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory