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Xlr3c Gene Detail
Summary
  • Symbol
    Xlr3c
  • Name
    X-linked lymphocyte-regulated 3C
  • Synonyms
    Xlr3b
  • Feature Type
    protein coding gene
  • IDs
    MGI:3047103
    NCBI Gene: 22446
  • Member of
    Xlr3 cluster
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:72298146-72308996 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.29 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    96 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3047103
 protein coding gene ChrX:72298144-72309178 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0035837
 protein coding gene ChrX:70933017-70947428 (+)
AKR/J MGP_AKRJ_G0035708
 protein coding gene ChrX:70941566-70952188 (+)
BALB/cJ MGP_BALBcJ_G0035819
 protein coding gene ChrX:69705390-69723884 (+)
C3H/HeJ MGP_C3HHeJ_G0035528
 protein coding gene ChrX:71218981-71236254 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0034766
 protein coding gene ChrX:54716335-54731307 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0035602
 protein coding gene ChrX:68472905-68483826 (-)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0035590
 protein coding gene ChrX:75605433-75618610 (-)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    6
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000058147 Ensembl Gene Model | MGI Sequence Detail 10851 C57BL/6J ±  kb
transcript ENSMUST00000080839 Ensembl | MGI Sequence Detail 1584 Not Applicable  
polypeptide ENSMUSP00000079651 Ensembl | MGI Sequence Detail 226 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Gene Ontology 1
  • Earliest
    J:22393 Bergsagel PL, et al., Sequence and expression of murine cDNAs encoding Xlr3a and Xlr3b, defining a new X-linked lymphocyte-regulated Xlr gene subfamily. Gene. 1994 Dec 15;150(2):345-50
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory