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Defb50 Gene Detail
Summary
  • Symbol
    Defb50
  • Name
    defensin beta 50
  • Synonyms
    Defb37, Pbd1
  • Feature Type
    protein coding gene
  • IDs
    MGI:3055870
    NCBI Gene: 387334
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:22313557-22321312 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 10.41 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    280 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3055870
 protein coding gene Chr8:22313555-22321312 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033432
 protein coding gene Chr8:19603428-19609920 (+)
A/J MGP_AJ_G0033412
 protein coding gene Chr8:19013625-19020117 (+)
AKR/J MGP_AKRJ_G0033339
 protein coding gene Chr8:19626738-19634506 (+)
BALB/cJ MGP_BALBcJ_G0033408
 protein coding gene Chr8:19138714-19145204 (+)
C3H/HeJ MGP_C3HHeJ_G0033122
 protein coding gene Chr8:19800821-19807313 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033925
 protein coding gene Chr8:20455583-20463339 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030886
 protein coding gene Chr8:16350588-16358319 (+)
CAST/EiJ MGP_CASTEiJ_G0032448
 protein coding gene Chr8:19217761-19232658 (+)
CBA/J MGP_CBAJ_G0033097
 protein coding gene Chr8:21273484-21279976 (+)
DBA/2J MGP_DBA2J_G0033252
 protein coding gene Chr8:18980929-18987421 (+)
FVB/NJ MGP_FVBNJ_G0033196
 protein coding gene Chr8:18756086-18762578 (+)
LP/J MGP_LPJ_G0033341
 protein coding gene Chr8:19631013-19638809 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033239
 protein coding gene Chr8:20917333-20923825 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033944
 protein coding gene Chr8:19537724-19545480 (+)
PWK/PhJ MGP_PWKPhJ_G0032160
 protein coding gene Chr8:18580291-18588232 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031995
 protein coding gene Chr8:18888728-18896315 (+)
WSB/EiJ MGP_WSBEiJ_G0032565
 protein coding gene Chr8:19677233-19685001 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    738
  • Tissues
    17
  • cDNA Data
    3
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 387334 NCBI Gene Model | MGI Sequence Detail 7756 C57BL/6J ±  kb
transcript NM_199067 RefSeq | MGI Sequence Detail 371 C57BL/6  
polypeptide Q6TU36 UniProt | EBI | MGI Sequence Detail 73 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 3
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:87858 Abbott DE, et al., Expressed sequence tag profiling identifies developmental and anatomic partitioning of gene expression in the mouse prostate. Genome Biol. 2003;4(12):R79
  • Latest
    J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory