Igkv9-129 Gene Detail

Summary

• Symbol
  Igkv9-129
• Name
  immunoglobulin kappa variable 9-129
• Synonyms
  immunoglobulin kappa light chain

• Feature Type
  gene segment
• IDs
  MGI:3525017
  NCBI Gene: 692182
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:67816777-67817250 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3525017	gene segment	Chr6:67816777-67817250 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000113	gene segment	Chr6:67951662-67952135 (+)
A/J	MGP_AJ_G0000105	gene segment	Chr6:65010176-65010473 (+)
AKR/J	MGP_AKRJ_G0000112	gene segment	Chr6:67058499-67058796 (+)
BALB/cJ	MGP_BALBcJ_G0000099	gene segment	Chr6:65397779-65398076 (+)
C3H/HeJ	MGP_C3HHeJ_G0000151	gene segment	Chr6:117137030-117137327 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000152	gene segment	Chr6:69529116-69529589 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000114	gene segment	Chr6:67303463-67303936 (+)
CBA/J	MGP_CBAJ_G0000106	gene segment	Chr6:72377012-72377309 (+)
DBA/2J	MGP_DBA2J_G0000102	gene segment	Chr6:64697897-64698194 (+)
FVB/NJ	MGP_FVBNJ_G0000100	gene segment	Chr6:64146049-64146522 (+)
LP/J	MGP_LPJ_G0000118	gene segment	Chr6:67829560-67830033 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000115	gene segment	Chr6:76107521-76107818 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000136	gene segment	Chr6:67036330-67036803 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0000117	gene segment	Chr6:67393092-67393565 (-)

Homology

• Gene Tree
  Igkv9-129
  

Expression

• Assay Results
  706
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000093906 (Evidence)
• NCBI Gene
  692182

Representative Sequences			Length	Strain/Species
genomic	692182	NCBI Gene Model | MGI Sequence Detail	474	C57BL/6J
transcript	AY498738	GenBank | ENA | DDBJ | MGI Sequence Detail	311	BALB/c
polypeptide	P01641	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR050150 Immunoglobulin Variable Light Chain
  IPR013106 Immunoglobulin V-set domain

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Developmental Gene Expression 1
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
• Latest
  J:117795 Lapter S, et al., Structure and implied functions of truncated B cell receptor mRNAs in early embryo and adult mesenchymal stem cells: C{micro} in {micro} heavy chain deficient mice. Stem Cells. 2007 Mar;25(3):761-70