About   Help   FAQ
Xlr4a Gene Detail
Summary
  • Symbol
    Xlr4a
  • Name
    X-linked lymphocyte-regulated 4A
  • Feature Type
    protein coding gene
  • IDs
    MGI:3574098
    NCBI Gene: 434794
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:72117951-72126084 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.29 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    5
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3574098
 protein coding gene ChrX:72117949-72126133 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0035835
 protein coding gene ChrX:70734261-70742575 (+)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0034815
 protein coding gene ChrX:56609345-56611222 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0035607
 protein coding gene ChrX:68621799-68638678 (+)
FVB/NJ MGP_FVBNJ_G0035601
 protein coding gene ChrX:69550138-69553606 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    3
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079845 Ensembl Gene Model | MGI Sequence Detail 8134 C57BL/6J ±  kb
transcript ENSMUST00000078775 Ensembl | MGI Sequence Detail 1162 Not Applicable  
polypeptide ENSMUSP00000077831 Ensembl | MGI Sequence Detail 215 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR051443 X-linked Lymphocyte-regulated/Synaptonemal Complex Protein 3
    IPR006888 XLR/SYCP3/FAM9 domain
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4
References
more
  • Summaries
    All 15
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:99307 Raefski AS, et al., Identification of a cluster of X-linked imprinted genes in mice. Nat Genet. 2005 Jun;37(6):620-4
  • Latest
    J:308374 Di Segni M, et al., Xlr4 as a new candidate gene underlying vulnerability to cocaine effects. Neuropharmacology. 2020 May 15;168:108019
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory