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Xlr4c Gene Detail
Summary
  • Symbol
    Xlr4c
  • Name
    X-linked lymphocyte-regulated 4C
  • Synonyms
    2900036K24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3574099
    NCBI Gene: 72891
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:72277682-72286736 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.29 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3574099
 protein coding gene ChrX:72277294-72286736 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0035836
 protein coding gene ChrX:70734305-70742575 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0035772
 protein coding gene ChrX:68212928-68226421 (-)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0034813
 protein coding gene ChrX:56393348-56395216 (+)
CBA/J MGP_CBAJ_G0035501
 protein coding gene ChrX:74985240-74995071 (+)
DBA/2J MGP_DBA2J_G0035609
 protein coding gene ChrX:68648585-68653299 (-)
FVB/NJ MGP_FVBNJ_G0035602
 protein coding gene ChrX:69550138-69553606 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    774
  • Tissues
    26
  • cDNA Data
    5
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72891 NCBI Gene Model | MGI Sequence Detail 9055 C57BL/6J ±  kb
transcript NM_183094 RefSeq | MGI Sequence Detail 1247 C57BL/6  
polypeptide NP_898917 RefSeq | MGI Sequence Detail 215 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR051443 X-linked Lymphocyte-regulated/Synaptonemal Complex Protein 3
    IPR006888 XLR/SYCP3/FAM9 domain
Molecular
Reagents
less
  • All nucleic 8
    cDNA 6
    Primer pair 2

    Microarray probesets 2
Other
Accession IDs
less
MGI:1920141
References
more
  • Summaries
    All 19
    Developmental Gene Expression 5
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:310975 He N, et al., At Term, XmO and XpO Mouse Placentas Show Differences in Glucose Metabolism in the Trophectoderm-Derived Outer Zone. Front Cell Dev Biol. 2017;5:63
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory