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Otx2os1 Gene Detail
Summary
  • Symbol
    Otx2os1
  • Name
    orthodenticle homeobox 2 opposite strand 1
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3583292
    NCBI Gene: 606497
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:48906745-49030805 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 25.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2879 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3583292
 lncRNA gene Chr14:48906165-49109098 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005542
 lincRNA gene Chr14:42531523-42665256 (+)
A/J MGP_AJ_G0005528
 lincRNA gene Chr14:41202614-41330688 (+)
AKR/J MGP_AKRJ_G0005507
 lincRNA gene Chr14:42808765-42948490 (+)
BALB/cJ MGP_BALBcJ_G0005510
 lincRNA gene Chr14:41253949-41382420 (+)
C3H/HeJ MGP_C3HHeJ_G0005457
 lincRNA gene Chr14:42593566-42733363 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005666
 lincRNA gene Chr14:44291754-44436359 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005035
 lincRNA gene Chr14:40519206-40643711 (+)
CAST/EiJ MGP_CASTEiJ_G0005399
 lincRNA gene Chr14:39734365-39865712 (+)
CBA/J MGP_CBAJ_G0005446
 lincRNA gene Chr14:45713169-45855062 (+)
DBA/2J MGP_DBA2J_G0005462
 lincRNA gene Chr14:41083619-41207809 (+)
FVB/NJ MGP_FVBNJ_G0005488
 lincRNA gene Chr14:40824536-40951174 (+)
LP/J MGP_LPJ_G0005546
 lincRNA gene Chr14:42778862-42921992 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005472
 lincRNA gene Chr14:45022869-45167303 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005665
 lincRNA gene Chr14:42348524-42482360 (+)
PWK/PhJ MGP_PWKPhJ_G0005350
 lincRNA gene Chr14:37979846-38107602 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005268
 lincRNA gene Chr14:38483465-38605903 (+)
WSB/EiJ MGP_WSBEiJ_G0005449
 lincRNA gene Chr14:42456000-42589707 (+)



Homology
more
  • Human Ortholog
    OTX2-AS1, OTX2 antisense RNA 1 (head to head)
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OTX2-AS1, OTX2 antisense RNA 1 (head to head)
  • Synonyms
    OTX2OS1
  • Links
    NCBI Gene ID: 100309464

  • Chr Location
    chr14:56812006-57152177 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    716
  • Tissues
    10
  • cDNA Data
    2
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 606497 NCBI Gene Model | MGI Sequence Detail 124061 C57BL/6J ±  kb
transcript NR_029384 RefSeq | MGI Sequence Detail 743 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 2
    Primer pair 1
References
more
  • Summaries
    All 12
    Developmental Gene Expression 1
    Phenotypes 5
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory