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Vax2os Gene Detail
Summary
  • Symbol
    Vax2os
  • Name
    ventral anterior homeobox 2, opposite strand
  • Synonyms
    Vax2os1, Vax2os2
Location &
Maps
more
  • Sequence Map
    Chr6:83669788-83689183 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 35.94 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    586 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3583301
 antisense lncRNA gene Chr6:83669786-83689183 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004299
 antisense lncRNA gene Chr6:84717005-84737931 (-)
A/J MGP_AJ_G0004277
 antisense lncRNA gene Chr6:81498228-81517641 (-)
AKR/J MGP_AKRJ_G0004259
 antisense lncRNA gene Chr6:83853713-83874982 (-)
BALB/cJ MGP_BALBcJ_G0004263
 antisense lncRNA gene Chr6:81519130-81539922 (-)
C3H/HeJ MGP_C3HHeJ_G0004242
 antisense lncRNA gene Chr6:100529665-100548637 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004412
 antisense lncRNA gene Chr6:87061845-87083301 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003886
 antisense lncRNA gene Chr6:79859999-79878778 (-)
CAST/EiJ MGP_CASTEiJ_G0004173
 antisense lncRNA gene Chr6:83876503-83897949 (-)
CBA/J MGP_CBAJ_G0004205
 antisense lncRNA gene Chr6:90486520-90511066 (-)
DBA/2J MGP_DBA2J_G0004221
 antisense lncRNA gene Chr6:80809283-80829279 (-)
FVB/NJ MGP_FVBNJ_G0004237
 antisense lncRNA gene Chr6:80020876-80041761 (-)
LP/J MGP_LPJ_G0004300
 antisense lncRNA gene Chr6:84723374-84742420 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004228
 antisense lncRNA gene Chr6:94755244-94775194 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004410
 antisense lncRNA gene Chr6:83679156-83707606 (-)
PWK/PhJ MGP_PWKPhJ_G0004126
 antisense lncRNA gene Chr6:79725259-79746100 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004070
 antisense lncRNA gene Chr6:82506621-82527143 (-)
WSB/EiJ MGP_WSBEiJ_G0004210
 antisense lncRNA gene Chr6:84099408-84120602 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    5
  • Endonuclease-mediated
    1
  • Gene trapped
    3
  • Spontaneous
    1
  • Genomic Mutations
    2 involving Vax2os
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    776
  • Tissues
    25
  • cDNA Data
    3
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085794 Ensembl Gene Model | MGI Sequence Detail 19396 C57BL/6J ±  kb
transcript ENSMUST00000155159 Ensembl | MGI Sequence Detail 4063 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 9
    cDNA 3
    Primer pair 6

    Microarray probesets 1
Other
Accession IDs
less
MGI:3583303
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory