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Gm1965 Gene Detail
Summary
  • Symbol
    Gm1965
  • Name
    predicted gene 1965
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3584270
    NCBI Gene: 434065
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:89117976-89124352 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 39.81 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    221 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3584270
 lncRNA gene Chr6:89117976-89124370 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007014
 lincRNA gene Chr6:90568753-90578943 (+)
A/J MGP_AJ_G0007010
 lincRNA gene Chr6:87094454-87101574 (+)
AKR/J MGP_AKRJ_G0006978
 lincRNA gene Chr6:89578230-89584628 (+)
BALB/cJ MGP_BALBcJ_G0006986
 lincRNA gene Chr6:87076792-87084266 (+)
C3H/HeJ MGP_C3HHeJ_G0006939
 lincRNA gene Chr6:94856485-94864318 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007150
 lincRNA gene Chr6:92986693-92994664 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006385
 lincRNA gene Chr6:85244742-85248948 (+)
CAST/EiJ MGP_CASTEiJ_G0006843
 lincRNA gene Chr6:89696547-89702812 (+)
CBA/J MGP_CBAJ_G0006911
 lincRNA gene Chr6:96513575-96519651 (+)
DBA/2J MGP_DBA2J_G0006931
 lincRNA gene Chr6:86366486-86373115 (+)
FVB/NJ MGP_FVBNJ_G0006955
 lincRNA gene Chr6:85565669-85572099 (+)
LP/J MGP_LPJ_G0007017
 lincRNA gene Chr6:90596657-90606860 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006935
 lincRNA gene Chr6:100651382-100663964 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007155
 lincRNA gene Chr6:89444245-89451674 (+)
PWK/PhJ MGP_PWKPhJ_G0006782
 lincRNA gene Chr6:85349865-85357203 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006692
 lincRNA gene Chr6:88257301-88263675 (+)
WSB/EiJ MGP_WSBEiJ_G0006900
 lincRNA gene Chr6:89891431-89897842 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    12
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 434065 NCBI Gene Model | MGI Sequence Detail 6377 C57BL/6J ±  kb
transcript NR_121593 RefSeq | MGI Sequence Detail 2433 C57BL/6  
polypeptide Q3UTD5 UniProt | EBI | MGI Sequence Detail 142 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 5
Other
Accession IDs
less
MGI:2141555, MGI:2141566, MGI:2141576, MGI:2141774
References
more
  • Summaries
    All 20
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory